1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atggtggagtaatgtagattcataatactgtcatgttcctttgtatttctattgtattattggttaactctgctcaacagttccctattataatttgcagGCCTTTGCTGAAGCAGATGCATTCTTTTGTTTTGTTGAGCTATTGAGTGGGTTTCGAGATAACTTTGTTCAGCAACTCGACAATAGTGTTGTGGGAATCC
species | Glycine max |
transcript | GLYMA08G11760.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCTCCTCTATTCTACGTGTTCAAAAATGACCCAGATGAGGAAAAATGCA GCCTTTGCTGAAGCAEST: gi|207710952|gb|GD694016.1|GD694016
genomic: GGCTCCTCTATTCTACGTGTTCAAAAATGACCCAGATGAGGAAAA-TGCAgtgagtattt ... taatttgcagGCCTTTGCTGAAGCA
EST: TGGCTCCTCTATTCTACGTGTTCAAAAATGACCCAGATGAGGAAAATGCA GCCTTTGCTGAAGCAGATGCEST: gi|7685538|gb|AW756186.1|AW756186
genomic: TGGCTCCTCTATTCTACGTGTTCAAAAATGACCCAGATGAGGAAAATGCAgtgagtattt ... taatttgcagGCCTTTGCTGAAGCAGATGC
EST: GTGTTCAAAAATGACCCAGATGAGGAAAATGCA GCCTTTGCTGAAGCAGATGCATTCTTTTGTTTTGTTGAGCTATTGAGTGGG
genomic: GTGTTCAAAAATGACCCAGATGAGGAAAATGCAgtgagtattt ... taatttgcagGCCTTTGCTGAAGCAGATGCATTCTTTTGTTTTGTTGAGCTATTGAGTGGG
tttctattgtattattggttaactctgctcaacagttccctattataatttgcagGCCTTTGCTGAAGCAGATGCATTCTTTTGTTTTGTTGAGCTATTGAGTGGGTTTCGAGATAACTTTGTTCAGCAACTCGACAATAGTGTTGTGGGAATCC
ggttaac putative branch site (score: 3)
tattataatttgca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggtggagtaatgtagattcataatactgtcatgttcctttgtatttctattgtattattggttaactctgctcaacagttccctattataatttgcagGCCTTTGCTGAAGCAGATGCATTCTTTTGTTTTGTTGAGCTATTGAGTGGGTTTCGAGATAACTTTGTTCAGCAACTCGACAATAGTGTTGTGGGAATCC
-tggtgga
- - - - - aatgtag
- - - - - - - - - - - - - - - -catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgct