1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctcaataatatgaattcattctcaattatgtcaacttggtttatccaatcaatataatttgtaattcttgtctgattaaatgacacgtcttgtcttgcagTATGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAG
species | Glycine max |
transcript | GLYMA07G40060.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCGGGGGTTTTCAAGGAGTAACTTATTTGCAAG TATGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGACEST: gi|207807077|gb|GD778014.1|GD778014
genomic: GCCGGGGGTTTTCAAGGAG-AACTTATTTGCAAGgtacttcgtt ... tgtcttgcagTATGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGAC
EST: GGAGAACTTATTTGCAAG TATGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGACGACEST: gi|208246755|gb|GE044367.1|GE044367
genomic: GGAGAACTTATTTGCAAGgtacttcgtt ... tgtcttgcagTATGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGAC
EST: AACTTATTTGCAAG TATGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGACGACEST: gi|58024987|gb|CX711728.1|CX711728
genomic: AACTTATTTGCAAGgtacttcgtt ... tgtcttgcagTATGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGAC
EST: GGGTTTTCAAGGGAG-ACTTTATTTGCAAG TATGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGACEST: gi|151396369|gb|EV266246.1|EV266246
genomic: GGGTTTTCAA-GGAGAAC-TTATTTGCAAGgtacttcgtt ... tgtcttgcagTATGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGAC
EST: GGGATAAGCTGTTGATTGCCGGGGGTTTTCAAGGAGAACTTATTTGCAAG TATGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGAC
genomic: GGGATAAGTTGTTGATTGCCGGGGGTTTTCAAGGAGAACTTATTTGCAAGgtacttcgtt ... tgtcttgcagTATGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGAC
caatcaatataatttgtaattcttgtctgattaaatgacacgtcttgtcttgcagTATGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAG
gtctgat putative branch site (score: 4)
tcttgtctt putative PPT
aatataatttgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcaataatatgaattcattctcaattatgtcaacttggtttatccaatcaatataatttgtaattcttgtctgattaaatgacacgtcttgtcttgcagTATGTAGATCGACCTGGTGTTAGCTTTTGTTCTAGAACTACTTATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT