1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaattgtttgatgtttatctcatttattgtgttttcccttgtgagggtcaactgtattttcatttattcctttttcactaaaaattaattgttttaatagGGTGTCGTGAAGAACATCATACCAGCTATAGCTTCAACAAATGCAATTATATCAGCAGCATGTGCACTAGAAACATTAAAGATTGCAACAGAGTGCAGCA
species | Glycine max |
transcript | GLYMA07G38770.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAGGGCTGAGCTTTTTGGCATTCCTGGGGTTACTTATTCTCTTACCCAG GGTGTCGTGAAGAACATCATACCAGCTATAGCTTCAACAAATGCAATTATAEST: gi|51335050|gb|CO978916.1|CO978916
genomic: AGAGGGCTGAGCTTTTTGGCATTCCTGGGGTTACTTATTCTCTTACCCAGgtatgtagat ... gttttaatagGGTGTCGTGAAGAACATCATACCAGCTATAGCTTCAACAAATGCAATTATA
EST: AGAGGGCTGAGCTTTTTGGCATTCCTGGGGTTACTTATTCTCTTACCCAG GGTGTCGTGAAGAACATCATACCAGCTATAGCTTCAACAAATGCAATTATAEST: gi|254322097|gb|GR837511.1|GR837511
genomic: AGAGGGCTGAGCTTTTTGGCATTCCTGGGGTTACTTATTCTCTTACCCAGgtatgtagat ... gttttaatagGGTGTCGTGAAGAACATCATACCAGCTATAGCTTCAACAAATGCAATTATA
EST: GGCTGAGCTTTTTGGCATTCCTGGGGTTACTTATTCTCTTACCCAG GGTGTCGTGAAGAACATCATACCAGCTATAGCTTCAACAAATGCAATTATA
genomic: GGCTGAGCTTTTTGGCATTCCTGGGGTTACTTATTCTCTTACCCAGgtatgtagat ... gttttaatagGGTGTCGTGAAGAACATCATACCAGCTATAGCTTCAACAAATGCAATTATA
ggtcaactgtattttcatttattcctttttcactaaaaattaattgttttaatagGGTGTCGTGAAGAACATCATACCAGCTATAGCTTCAACAAATGCAATTATATCAGCAGCATGTGCACTAGAAACATTAAAGATTGCAACAGAGTGCAGCA
ttgtttt CT-rich tract
atttattcctttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaattgtttgatgtttatctcatttattgtgttttcccttgtgagggtcaactgtattttcatttattcctttttcactaaaaattaattgttttaatagGGTGTCGTGAAGAACATCATACCAGCTATAGCTTCAACAAATGCAATTATATCAGCAGCATGTGCACTAGAAACATTAAAGATTGCAACAGAGTGCAGCA
- -ttgtttg
- - - - - - - - - - - - - - - - - -cccttgt
- - - - - - - - - - - - - - - - - - - - - - - - caactgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaattaa