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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatgctctctcaatatgccaaaacgatttttatttaccaagaggtatttctcaaatcagttttttgtttgttgacagAGGAACTCAATATATGCCCGTGTGGATTCTGTGCTTCGTAAAATTCGTGATACGTCAGAG

Basic information

species Glycine max
transcript GLYMA07G36720.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254346701|gb|GR856423.1|GR856423
EST:     CATTCTCTAATACATCTCACATCAGTCAAATGCTCCAAGATGTTGCTTTG                         AGGAACTCAATATATGCCCGTGTGGATTCTGTGCTTCGTAAAATTCGTGAT
genomic: CATTCTCTAATACATCTCACATCAGTCAAATGCTCCAAGATGTTGCTTTGgtgaatgctc ... ttgttgacagAGGAACTCAATATATGCCCGTGTGGATTCTGTGCTTCGTAAAATTCGTGAT
EST: gi|192312334|gb|FK005338.1|FK005338
EST:     ATTCTCTAATACATCTCACATCAGTCAAATGCTCCAAGATGTTGCTTTG                         AGGAACTCAATATATGCCCGTGTGGATTCTGTGCTTCGTAAAATTCGTGAT
genomic: ATTCTCTAATACATCTCACATCAGTCAAATGCTCCAAGATGTTGCTTTGgtgaatgctc ... ttgttgacagAGGAACTCAATATATGCCCGTGTGGATTCTGTGCTTCGTAAAATTCGTGAT
EST: gi|51337572|gb|CO981438.1|CO981438
EST:     CATTCTCTAATACATCTCACATCAGTCAAATGCTCCAAGATGTTGCTTTG                         AGGAACTCAATATATGCCCGTGTGGATTCTGTGCTTCGTAAAATTCGTGAT
genomic: CATTCTCTAATACATCTCACATCAGTCAAATGCTCCAAGATGTTGCTTTGgtgaatgctc ... ttgttgacagAGGAACTCAATATATGCCCGTGTGGATTCTGTGCTTCGTAAAATTCGTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgatttttatttaccaagaggtatttctcaaatcagttttttgtttgttgacagAGGAACTCAATATATGCCCGTGTGGATTCTGTGCTTCGTAAAATTCGTGATACGTCAGAG
                                     ttttttgttt  CT-rich tract
     ttttattta  TA-rich tract