1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatttaaatggctactcaagatttatttatgttaaatgcaagcatcttgactctttattatagtattgataagtttttattttcacagGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCTAAACAT
species | Glycine max |
transcript | GLYMA06G15870.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGATTGTCTCTGGACTTTCCTATCTTCATGGGAGAAATACAGTACATAG GGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCTEST: gi|24136233|gb|BU926743.1|BU926743
genomic: CAGATTGTCTCTGGACTTTCCTATCTTCATGGGAGAAATACAGTACATAGgtaatttaaa ... attttcacagGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCT
EST: CAGATTGTCTCTGGACTTTCCTATCTTCATGGGAGAAATACAGTACATAG GGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCTEST: gi|9203893|gb|BE330117.1|BE330117
genomic: CAGATTGTCTCTGGACTTTCCTATCTTCATGGGAGAAATACAGTACATAGgtaatttaaa ... attttcacagGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCT
EST: CAGATTGTCTCTGGACTTTCCTATCTTCATGGGAGAAATACAGTACATAG GGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCT
genomic: CAGATTGTCTCTGGACTTTCCTATCTTCATGGGAGAAATACAGTACATAGgtaatttaaa ... attttcacagGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCT
aaatgcaagcatcttgactctttattatagtattgataagtttttattttcacagGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCTAAACAT
tattgat putative branch site (score: 3)
tttttattttc putative PPT
actctttattatagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttaaatggctactcaagatttatttatgttaaatgcaagcatcttgactctttattatagtattgataagtttttattttcacagGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCTAAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG