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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctagtagcctcataatttagaagctattagaaattctgagtaagatattttttgttcaaatccttattgctgatagtatattttgatgctgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA

Basic information

species Glycine max
transcript GLYMA06G08260.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192293857|gb|FG986066.1|FG986066
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|207730657|gb|GD706956.1|GD706956
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|254326872|gb|GR836481.1|GR836481
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|151403047|gb|EV272860.1|EV272860
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|120529083|gb|EH257217.1|EH257217
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|151400109|gb|EV269923.1|EV269923
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAAGATGAAGCCGAG                         GATTTAGTAAAAAAG-CAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|33389738|gb|CA852945.1|CA852945
EST:     GTTTCTTTGACC-AGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCGCTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|193673163|gb|FK615021.1|FK615021
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|151393354|gb|EV263229.1|EV263229
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|151405592|gb|EV275406.1|EV275406
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|193464898|gb|FK432378.1|FK432378
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCNGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|31463156|gb|CD405184.1|CD405184
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCGCTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|7030215|gb|AW459998.1|AW459998
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|5605707|gb|AI899868.1|AI899868
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|15337215|gb|BI497871.1|BI497871
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCT
EST: gi|13478110|gb|BG507722.1|BG507722
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAACGATCCAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|16997060|gb|BM086432.1|BM086432
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGC
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGC
EST: gi|192333616|gb|FK025433.1|FK025433
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|193551144|gb|FK506067.1|FK506067
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|254321190|gb|GR827639.1|GR827639
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|27427298|gb|CA938818.1|CA938818
EST:     GTTTCTTTGACCAAGCCTGGAAAGAAGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGGTTCACTGGCTATTGCTCGTGATGGTGCA
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCA
EST: gi|10231723|gb|BE800611.1|BE800611
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCCAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|208146331|gb|GD946210.1|GD946210
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAA-GGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|254321189|gb|GR827638.1|GR827638
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|192330044|gb|FK020860.1|FK020860
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|31456680|gb|CD398708.1|CD398708
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCGCTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|21600722|gb|BQ611053.1|BQ611053
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|193327659|gb|FK297362.1|FK297362
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|58017005|gb|CX703747.1|CX703747
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|120494878|gb|EH223045.1|EH223045
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|24205242|gb|BU964495.1|BU964495
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|192332116|gb|FK026368.1|FK026368
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|22525058|gb|BU083869.1|BU083869
EST:     CCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: CCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|207704098|gb|GD684548.1|GD684548
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|254326873|gb|GR836482.1|GR836482
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|57575063|gb|CX548038.1|CX548038
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|14516464|gb|BI095136.1|BI095136
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGAATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|31457184|gb|CD399212.1|CD399212
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCGCTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|192310604|gb|FG999249.1|FG999249
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|9899223|gb|BE608121.1|BE608121
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|5688240|gb|AI941255.1|AI941255
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|193448216|gb|FK416399.1|FK416399
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAA-GGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|192330043|gb|FK020859.1|FK020859
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|192310605|gb|FG999250.1|FG999250
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|193665886|gb|FK611273.1|FK611273
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|13480102|gb|BG509435.1|BG509435
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|193674587|gb|FK619989.1|FK619989
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|19053309|gb|BM731976.1|BM731976
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|17519481|gb|BM188523.1|BM188523
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|19347226|gb|BM892106.1|BM892106
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|193477231|gb|FK439658.1|FK439658
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGACAGTTTCACTGGCTATTGCTCGTGATGGTGCAAG
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGG-CAGTTTCACTGGCTATTGCTCGTGATGGTGCAAG
EST: gi|193693179|gb|FK633756.1|FK633756
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
EST: gi|37995371|gb|CF806960.1|CF806960
EST:     GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG                         GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT
genomic: GTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAGgtgtgtgttt ... tgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattttttgttcaaatccttattgctgatagtatattttgatgctgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA
                            atagtatattttgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gctagtagcctcataatttagaagctattagaaattctgagtaagatattttttgttcaaatccttattgctgatagtatattttgatgctgtatgacagGATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - ttctgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgatgc