1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aatgactaccgaatgcccctctccctttatttcctgtaataaaattatcaattgtgcatagactctcctgtggcagacagtgatattctatttgatgcagGGTCCTTAACATGGTACATTGGTGAGGACTTGGTAAAGAGCATCGAAGATGGACACCTGAACCTGTTACATGGTTCAGATTATGTTGAAAAGTGACTTTT
species | Glycine max |
transcript | GLYMA06G00730.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACAATCTTATTGCATGCGACAAGAGAACAAGAACAATCCAACAAGCAAG GGTCCTTAACATGGTACATTGGTGAGGACTTGGTAAAGAGCATCGAAGATGEST: gi|26057540|gb|CA800454.1|CA800454
genomic: AACAATCTTATTGCATGCGACAAGAGAACAAGAACAATCCAACAAGCAAGgtaattaata ... tttgatgcagGGTCCTTAACATGGTACATTGGTGAGGACTTGGTAAAGAGCATCGAAGATG
EST: AACAATCTTATTGCATGCGACAAGAGAACAAGAACAATCCAACAAGCAAG GGTCCTTAACATGGTACATTGGTGAGGACTTGGTAAAGAGCATCGAAGATG
genomic: AACAATCTTATTGCATGCGACAAGAGAACAAGAACAATCCAACAAGCAAGgtaattaata ... tttgatgcagGGTCCTTAACATGGTACATTGGTGAGGACTTGGTAAAGAGCATCGAAGATG
tatcaattgtgcatagactctcctgtggcagacagtgatattctatttgatgcagGGTCCTTAACATGGTACATTGGTGAGGACTTGGTAAAGAGCATCGAAGATGGACACCTGAACCTGTTACATGGTTCAGATTATGTTGAAAAGTGACTTTT
atttgat putative branch site (score: 5)
ttctattt CT-rich tract
atattctatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgactaccgaatgcccctctccctttatttcctgtaataaaattatcaattgtgcatagactctcctgtggcagacagtgatattctatttgatgcagGGTCCTTAACATGGTACATTGGTGAGGACTTGGTAAAGAGCATCGAAGATGGACACCTGAACCTGTTACATGGTTCAGATTATGTTGAAAAGTGACTTTT
- - - - - gaatgcc
- - - - - - - - - ctctccc
- - - - - - - - - - - - - - -tttcctg
- - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagaca