1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gattttttgtatgcttaaactttaattaaaataaaattgaagaacgtgttggggagaagtacattgatgatgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
species | Glycine max |
transcript | GLYMA05G31450.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAAATGAAATCTGTGTTGGTGGATTTCCTTGGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|193524006|gb|FK481051.1|FK481051
genomic: CAAAATGAAATCTGTGTTGGTGGATTTCCTTG-TGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|208272715|gb|GE066221.1|GE066221
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: GGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|207711491|gb|GD693645.1|GD693645
genomic: GGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|20812941|gb|BQ297419.1|BQ297419
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: AATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|208277201|gb|GE077876.1|GE077876
genomic: AATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|22525230|gb|BU084041.1|BU084041
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|7028502|gb|AW458285.1|AW458285
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGAATTNCTTGTGGGGGCCAGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTEST: gi|15285656|gb|BI469547.1|BI469547
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTEST: gi|27424631|gb|CA936151.1|CA936151
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|207810457|gb|GD781147.1|GD781147
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|193598415|gb|FK553671.1|FK553671
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCAEST: gi|208050824|gb|GD848049.1|GD848049
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCA
EST: CCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|193485468|gb|FK452551.1|FK452551
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: AAATACTGTGTTGGTTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|9259990|gb|BE348137.1|BE348137
genomic: AAAT-CTGTGTTGG-TGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|193328454|gb|FK293914.1|FK293914
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAGCCATCTGGGCAACAATGATGGCATGAATEST: gi|208055212|gb|GD853173.1|GD853173
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATEST: gi|207818649|gb|GD791968.1|GD791968
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCAT
EST: CCAAAATGAAATCTGTGTTGGTGGNTTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|208290678|gb|GE082350.1|GE082350
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: GGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|193403549|gb|FK366919.1|FK366919
genomic: GGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: AATCTGTGTTGGTTGGTATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|192301388|gb|FG994712.1|FG994712
genomic: AATCTGTGTTGG-TGG-ATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTCCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|193614156|gb|FK565894.1|FK565894
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAAEST: gi|193564976|gb|FK520133.1|FK520133
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAA
EST: CAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGACAAACAATGATGGEST: gi|15203303|gb|BI426071.1|BI426071
genomic: CAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGG-CCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGG-CAA-CAATGATGG
EST: CCATAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|193396085|gb|FK361840.1|FK361840
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: GGCCGGGATCAAG TEST: gi|193396085|gb|FK361840.1|FK361840
genomic: GGCCGGCATCAAGgtacaacttt ... tgagtgacag-
EST: GGCCGGGATCAAG TEST: gi|208216053|gb|GE008961.1|GE008961
genomic: GGCCGGCATCAAGgtacaacttt ... tgagtgacag-
EST: GGCCGGCATCAAG TEST: gi|208216053|gb|GE008961.1|GE008961
genomic: GGCCGGCATCAAGgtacaacttt ... tgagtgacag-
EST: GGCCGGCATCAAG TEST: gi|120529530|gb|EH257664.1|EH257664
genomic: GGCCGGCATCAAGgtacaacttt ... tgagtgacag-
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAAGCATCTGGGCAACAATGATEST: gi|193396894|gb|FK365028.1|FK365028
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATTCTTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAEST: gi|8670153|gb|BE191260.1|BE191260
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACA-TC-TATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGA
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|10231165|gb|BE800112.1|BE800112
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|15287101|gb|BI470992.1|BI470992
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGTATGAATEST: gi|13312611|gb|BG406262.1|BG406262
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|27425475|gb|CA936995.1|CA936995
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|193373114|gb|FK335098.1|FK335098
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAGCCATCTGGGCAACAATGATGGCATGAATEST: gi|9986213|gb|BE660321.1|BE660321
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|9204872|gb|BE331096.1|BE331096
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTTGAGT-ACAACCATCTGGGCAACAATGATGGCATGAAEST: gi|208096888|gb|GD896725.1|GD896725
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGT-GAGTTACAACCATCTGGGCAACAATGATGGCATGAA
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|20498701|gb|BQ273631.1|BQ273631
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|6913694|gb|AW395224.1|AW395224
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATEST: gi|207833383|gb|GD804514.1|GD804514
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: TTGTGGGGGCCGGCATCAAG CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: TTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
gtgttggggagaagtacattgatgatgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
ttttaat putative branch site (score: 3)
atgatgttttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattttttgtatgcttaaactttaattaaaataaaattgaagaacgtgttggggagaagtacattgatgatgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA