Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatctgttagtttctttttctttctgatgcataagcttgtgtatgactgtatgggtctttaaactagctccattacttgtaacagTTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCAAAACAACTGAATGGGGTGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTCC

Basic information

species Glycine max
transcript GLYMA05G30830.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30830.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G24570.1 (Arabidopsis thaliana), 3'ss of exon 5
gtcatctgttagtttctttttctttctgatgcataagcttgtgtatgactgtatgggtctttaaactagctccattacttgtaacagTTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCAAAACAACTGAATGG---GGTGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTCC
       |||  ||  | |  |  | |      |  | || ||  | |  |||    || |||   |   || | |       |||||| |||||||||||||| || ||||| |||||||||||||||  ||||| || ||||   | ||||||||||||||| | |   ||||| ||  | ||||   
-------gttgattgatataacactttttgttttctgtttttgcttaatagta-aactcattatgttttgtctact--caaatacagTTTTCAGAGAACTTTACTATTGTTCTGTTTCATTATGATGGCGTAACAAGTGCATGGAATGATGAGTTTGAGTGGTCGAGGAATGCAATACACATAAGTG---

upper sequence: GLYMA05G30830.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 6
gtcatctgttagtttctttttctttctgatgcataagcttgtgtatgactgtatgggtctttaaactagctccattacttgtaacagTTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCAAAACAACTGAATGGGGTGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTCC
       |||  |||||    || ||       |  |||  |  ||   ||| |   |  |   ||||  |   |   ||||  |||||||| ||| ||||||| ||  |||||||||||||||||||   |||||||||||||| ||| ||||||||||||||| |||| ||||||||||| || |
-------gttgatttctccccctctcc----tctctgctactaaat--ttgtctctcttctgctactaaat--gtctgttgtg-cagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC

upper sequence: GLYMA05G30830.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 2
gtcatctgttagtttctttttctttctgatgcataagcttgtgtatgactgtatgggtctttaaactagctccattacttgtaacagTTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCAAAACAACTGAATGGGGTGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTCC
       |||  |||||    || ||       |  |||  |  ||   ||| |   | ||   ||||  |  ||   ||||  |||||||| ||| ||||||| ||  |||||||||||||||||||  ||||||||||||||| ||| ||||||||||||||| |||| ||||||||||| || |
-------gttgatttctccccctctcc----tctctgctactaaat--ttgtctctcttttgctactaaat--atctattgtg-cagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCAAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208189805|gb|GD987765.1|GD987765
EST:     ATATAATATTGATGCAAACGTGAAAAAG                         TTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCAAAACAACT
genomic: ATATAATATTGATGCAAACGTGAAAAAGgtcatctgtt ... cttgtaacagTTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCAAAACAACT
EST: gi|7639690|gb|AW734007.1|AW734007
EST:     TCACTGTTGGTTATAGTCAGAGATATAATATTGATGCAAACGTGAAAAAG                         TTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCAAAACAACT
genomic: TCACTGTTGGTTATAGTCAGAGATATAATATTGATGCAAACGTGAAAAAGgtcatctgtt ... cttgtaacagTTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCAAAACAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagcttgtgtatgactgtatgggtctttaaactagctccattacttgtaacagTTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCAAAACAACTGAATGGGGTGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTCC
                           tttaaacta  TA-rich tract