1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ggatccttatattgatttgtaatataattgcttctggactcttttattagttgtttccattttttatacgtgacactagaataaataatggattttgcagCAATGAAACGACTTCAAGACATGGGTGCCTCATATTTCATATTGGATCTCAGAGACAATCTTGGTGGGCTAGTACAG
species | Glycine max |
transcript | GLYMA05G29820.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATACGCCTTAAAGAGTTCAATGCATTGGCCAGAAAAGACTTGGTCATTG CAATGAAGCGACTTCAAGACATGGGTGCCTCATATGTCATATTGGATCTCAEST: gi|17021070|gb|BM092104.1|BM092104
genomic: TATACGCCTCAAAGAGTTCAATGCATTGGCCAGAAAAGACTTGGTCATTGgtaagctttt ... gattttgcagCAATGAAACGACTTCAAGACATGGGTGCCTCATATTTCATATTGGATCTCA
EST: ATTGGCCAGAAAAGACTTGGTCATTG CAATGAAACGACTTCAAGACATGGGTGCCTCATATTTCATATTGGATCTCAEST: gi|11412269|gb|BF424280.1|BF424280
genomic: ATTGGCCAGAAAAGACTTGGTCATTGgtaagctttt ... gattttgcagCAATGAAACGACTTCAAGACATGGGTGCCTCATATTTCATATTGGATCTCA
EST: TATACGCCTCAAAGAGTTCAATGCATTGGCCAGAAAAGACTTGGTCATTG CAATGAAACGACTTCAAGACATGGGTGCCTCATATTTCATATTGGATCTCAEST: gi|26057180|gb|CA800094.1|CA800094
genomic: TATACGCCTCAAAGAGTTCAATGCATTGGCCAGAAAAGACTTGGTCATTGgtaagctttt ... gattttgcagCAATGAAACGACTTCAAGACATGGGTGCCTCATATTTCATATTGGATCTCA
EST: TATACGCCTCAAAGAGTTCAATGCATTGGCCAGAAAAGACTTGGTCATTG CAATGAAACGACTTCAAGACATGGGTGCCTCATATTTCATATTGGATCTCA
genomic: TATACGCCTCAAAGAGTTCAATGCATTGGCCAGAAAAGACTTGGTCATTGgtaagctttt ... gattttgcagCAATGAAACGACTTCAAGACATGGGTGCCTCATATTTCATATTGGATCTCA
attagttgtttccattttttatacgtgacactagaataaataatggattttgcagCAATGAAACGACTTCAAGACATGGGTGCCTCATATTTCATATTGGATCTCAGAGACAATCTTGGTGGGCTAGTACAG
aataaataatggattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatccttatattgatttgtaatataattgcttctggactcttttattagttgtttccattttttatacgtgacactagaataaataatggattttgcagCAATGAAACGACTTCAAGACATGGGTGCCTCATATTTCATATTGGATCTCAGAGACAATCTTGGTGGGCTAGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - tgatttg
- - - - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaataaa