1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gactatggttttctttgaagtatgcttgaaattttatggtaggaactttatgtgtcgacctttcttcatgacatctatgtggcaatattcttgttttcagGGAACAAATTCAAGATTACCTGCTCTCAGATGGTGAAGATGAAACATAGGACTACTTTTTTACATTGAGGCTCTATGTTGAAGGGATAAATACTGGTTGT
species | Glycine max |
transcript | GLYMA03G29320.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGGTTGGCCGAGCAAAGCAAGCCAACAATGGTAATTTGAGTCTGCTAAG GGAACAAATTCAAGATTACCTGCTCTCAGATGGTGAAGATGAAACATAGGAEST: gi|9899151|gb|BE608178.1|BE608178
genomic: GTGGTTGGCCGAGCAAAGCAAGCCAACAATGGTAATTTGAGTCTGCTAAGgtgagtatct ... ttgttttcagGGAACAAATTCAAGATTACCTGCTCTCAGATGGTGAAGATGAAACATAGGA
EST: GTGGTTGGCCGAGCAAAGCAAGCCAACAATGGTAATTTGAGTCTGCTAAG GGAACAAATTCAAGATTACCTGCTCTCAGATGGTGAAGATGAAACATAGGAEST: gi|209704328|gb|BW678304.1|BW678304
genomic: GTGGTTGGCCGAGCAAAGCAAGCCAACAATGGTAATTTGAGTCTGCTAAGgtgagtatct ... ttgttttcagGGAACAAATTCAAGATTACCTGCTCTCAGATGGTGAAGATGAAACATAGGA
EST: GTGGTTGGCCGAGCAAAGCAAGCCAACAATGGTAATTTGAGTCTGCTAAG GGAACAAATTCAAGATTACCTGCTCTCAGATGGTGAAGATGAAACATAGGA
genomic: GTGGTTGGCCGAGCAAAGCAAGCCAACAATGGTAATTTGAGTCTGCTAAGgtgagtatct ... ttgttttcagGGAACAAATTCAAGATTACCTGCTCTCAGATGGTGAAGATGAAACATAGGA
ctttatgtgtcgacctttcttcatgacatctatgtggcaatattcttgttttcagGGAACAAATTCAAGATTACCTGCTCTCAGATGGTGAAGATGAAACATAGGACTACTTTTTTACATTGAGGCTCTATGTTGAAGGGATAAATACTGGTTGT
ttcttgttttc CT-rich tract
aatattcttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gactatggttttctttgaagtatgcttgaaattttatggtaggaactttatgtgtcgacctttcttcatgacatctatgtggcaatattcttgttttcagGGAACAAATTCAAGATTACCTGCTCTCAGATGGTGAAGATGAAACATAGGACTACTTTTTTACATTGAGGCTCTATGTTGAAGGGATAAATACTGGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - -gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - tatgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtggc