1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgcaaaatgattatctattataatttgtatcctggcagacactacaatgtttcgcataaacaatgagctcaccctgctcacttcatgacttcattacagATGTACCCTTCTTGATTTGATGGTGGAACTCGATCGAATTTTACGCCCAGAAGGCACTGTTGTGGTGAGGGATACCCCTGAAGTAATTGAGAAAGTAGCT
species | Glycine max |
transcript | GLYMA03G01870.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGATCCAGCCTCTGGCAGAAACAG ATGTACCCTTCTTGATTTGATGGTGGAACTCGATCGAATTTTACGCCCAGAEST: gi|31464919|gb|CD406947.1|CD406947
genomic: AGGATCCAGCCTCTGGCAGAAACAGgtattttcat ... ttcattacagATGTACCCTTCTTGATTTGATGGTGGAACTCGATCGAATTTTACGCCCAGA
EST: GTGGCAAGCATGGAATCACTTGTAAAGGATCCAGCCTCTGGCAGAAACAG ATGTACCCTTCTTGATTTGATGGTGGAACTCGATCGAATTTTACGCCCAGAEST: gi|120528788|gb|EH256922.1|EH256922
genomic: GTGGCAAGCATGGAATCACTTGTAAAGGATCCAGCCTCTGGCAGAAACAGgtattttcat ... ttcattacagATGTACCCTTCTTGATTTGATGGTGGAACTCGATCGAATTTTACGCCCAGA
EST: GTGGCAAGCATGGAATCACTTGTAAAGGATCCAGCCTCTGGCAGAAACAG ATGTACCCTTCTTGATTTGATGGTGGAACTCGATCGAATTTTACGCCCAGA
genomic: GTGGCAAGCATGGAATCACTTGTAAAGGATCCAGCCTCTGGCAGAAACAGgtattttcat ... ttcattacagATGTACCCTTCTTGATTTGATGGTGGAACTCGATCGAATTTTACGCCCAGA
caatgtttcgcataaacaatgagctcaccctgctcacttcatgacttcattacagATGTACCCTTCTTGATTTGATGGTGGAACTCGATCGAATTTTACGCCCAGAAGGCACTGTTGTGGTGAGGGATACCCCTGAAGTAATTGAGAAAGTAGCT
tgctcac putative branch site (score: 2)
cttcatt putative PPT
ataaacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcaaaatgattatctattataatttgtatcctggcagacactacaatgtttcgcataaacaatgagctcaccctgctcacttcatgacttcattacagATGTACCCTTCTTGATTTGATGGTGGAACTCGATCGAATTTTACGCCCAGAAGGCACTGTTGTGGTGAGGGATACCCCTGAAGTAATTGAGAAAGTAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
atgcaaa
- - - - - - - - - - - - - - - - - - cagacac
- - - - - - - - - - - - - - - - - - - - - - -caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgac