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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcttgcacttaaatatgcactctataggtcatgtaatttatttattaatgcacatattgtgtttgtgaagGTATCTTGATGCAGCTGGAATGAAGAAGTCAAATGCTTATCTCATCAATGGGGTTGTAATATTCATTGCTTGGCTG

Basic information

species Glycine max
transcript GLYMA02G45240.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G45240.3 (Glycine max), 3'ss of exon 6
lower sequence: Vv12s0028g01000.t01 (Vitis vinifera), 3'ss of exon 5
gtaatcttgcacttaaatatgcactctataggtcat------gtaatttatttattaatgcacatattgtgtttgtgaagGTATCTTGATGCAGCTGGAATGAAGAAGTCAAATGCTTATCTCATCAATGGGGTTGTAATATTCATTGCTTGGCTG
||||      ||| | | |   | |  | ||||  |      |   | | ||| || ||   ||  ||| |||||| ||||||||||||||  ||||||||||||| |||    || ||| |||| ||||||||||| || ||| |||||||||||
gtaacacccaactaataaaatgagttgacaggttttagttctgctctctcttttttgatttgcaacttgggtttgt-aagGTATCTTGATGTTGCTGGAATGAAGAGGTCCGGAGCATATGTCATGAATGGGGTTGTGATTTTCTTTGCTTGGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254325459|gb|GR838340.1|GR838340
EST:     TACATGGTCCTGATCTCTGAGACAACTACTCCTGGGATCAACTTGAGATG                         GTATCTTGATGCAGCTGGAATGAAGAAGTCAAATGCTTATCTCATCAATGG
genomic: TACATGGTCCTGATCTCTGAGACAACTACTCCTGGGATCAACTTGAGATGgtaatcttgc ... gtttgtgaagGTATCTTGATGCAGCTGGAATGAAGAAGTCAAATGCTTATCTCATCAATGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcactctataggtcatgtaatttatttattaatgcacatattgtgtttgtgaagGTATCTTGATGCAGCTGGAATGAAGAAGTCAAATGCTTATCTCATCAATGGGGTTGTAATATTCATTGCTTGGCTG
                           tattaat  putative branch site (score: 2)
               atgtaatttatttatt  TA-rich tract