1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tctttatacatttccactgtgatattttaatttttaagtgttattgttccttgatcactttgtttttgtaatagtaaggtaacctgttcttgtgctgcagGACAAAGGGTAATTGGAGAGCCGATTGCCTCTGGGTTAGCCCTTGATGAATCCTGGCTTTGGCATCCTGACTTTGACATTGCAGCAAA
species | Glycine max |
transcript | GLYMA02G44690.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTAATGAGCATTGATGCAATGGAAGAAATTGCAAAAGCCCGGAAATCAG GACAAAGGGTAATTGGAGAGCCGATTGCCTCTGGGTTAGCCCTTGATGAATEST: gi|21994166|gb|BQ785694.1|BQ785694
genomic: TGTAATGAGCATTGATGCAATGGAAGAAATTGCAAAAGCCCGGAAATCAGgttctttaat ... tgtgctgcagGACAAAGGGTAATTGGAGAGCCGATTGCCTCTGGGTTAGCCCTTGATGAAT
EST: TGTAATGAGCATTGATGCAATGGAAGAAATTGCAAAAGCCCGGAAATCAG GACAAAGGGTAATTGGAGAGCCGATTGCCTCTGGGTTAGCCCTTGATGAAT
genomic: TGTAATGAGCATTGATGCAATGGAAGAAATTGCAAAAGCCCGGAAATCAGgttctttaat ... tgtgctgcagGACAAAGGGTAATTGGAGAGCCGATTGCCTCTGGGTTAGCCCTTGATGAAT
gttccttgatcactttgtttttgtaatagtaaggtaacctgttcttgtgctgcagGACAAAGGGTAATTGGAGAGCCGATTGCCTCTGGGTTAGCCCTTGATGAATCCTGGCTTTGGCATCCTGACTTTGACATTGCAGCAAA
aggtaac putative branch site (score: 3)
cctgttctt CT-rich tract
tttgtttttgtaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttatacatttccactgtgatattttaatttttaagtgttattgttccttgatcactttgtttttgtaatagtaaggtaacctgttcttgtgctgcagGACAAAGGGTAATTGGAGAGCCGATTGCCTCTGGGTTAGCCCTTGATGAATCCTGGCTTTGGCATCCTGACTTTGACATTGCAGCAAA
- - - - - - tccactg
- - - - - - - - - - - - - - - - - - - - - - - ttccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacctgt