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gtaagtatatctttgaggatttcttgttatcactttaaggtcggggttgttaatttttgtaaaaccaataatgtgaaacctgactatgctctttttttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTGCAAATCTGGATGCTGATAAATATAAGGATCTGGCTGAAAA
species | Glycine max |
transcript | GLYMA02G01750.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|208044733|gb|GD841101.1|GD841101
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|193333978|gb|FK301366.1|FK301366
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|254328074|gb|GR835039.1|GR835039
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|57575003|gb|CX547978.1|CX547978
genomic: GCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: AAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|192333634|gb|FK026879.1|FK026879
genomic: AAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|58016979|gb|CX703721.1|CX703721
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCNT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|208245788|gb|GE050596.1|GE050596
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAACATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|208340776|gb|GE133712.1|GE133712
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTTGTTGGACATTGACAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|163921267|gb|EH038909.1|EH038909
genomic: G-TG-TGGACATTG-CAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|207684797|gb|GD664728.1|GD664728
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: TGGTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|193330432|gb|FK295308.1|FK295308
genomic: TGGTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: TGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|193679432|gb|FK621042.1|FK621042
genomic: TGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|193720823|gb|FK658987.1|FK658987
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|193304672|gb|FK272157.1|FK272157
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: CACCCTGGTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAG
genomic: CACCCTGGTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... tttccttcagACTTACGAGAAAGTTGCCACAG
taatttttgtaaaaccaataatgtgaaacctgactatgctctttttttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTGCAAATCTGGATGCTGATAAATATAAGGATCTGGCTGAAAA
acctgac putative branch site (score: 3)
ctatgctctttttttc CT-rich tract
tttgtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatatctttgaggatttcttgttatcactttaaggtcggggttgttaatttttgtaaaaccaataatgtgaaacctgactatgctctttttttccttcagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTGCAAATCTGGATGCTGATAAATATAAGGATCTGGCTGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT