1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgggaattcatttgatggaaattatttatcttttgctagtaaaagaaattctatttcatgagatgtagtaacattctggctttttcaaactattttcagGCCAGATGTTTCTGAGCTGGAGTTGAAATTTTCCGAACAATCAAAAATATTGTTGAATCTTCAACAAAAAGTTGATGACTTGGCATCCAAG
species | Glycine max |
transcript | GLYMA01G29280.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAATGTAAATTGTTTCCTGCAGATGTTCAGATTCAGTCCATATATCCATT GCCAGATGTTTCTGAGCTGGAGTTGAAATTTTCCGAACAATCAAAAATATTEST: gi|38191775|gb|CF920981.1|CF920981
genomic: GAATGTAAATTGTTTCCTGCAGATGTTCAGATTCAGTCCATATATCCATTgtaaaaattt ... ctattttcagGCCAGATGTTTCTGAGCTGGAGTTGAAATTTTCCGAACAATCAAAAATATT
EST: TGCAGATGTTCAGATTCAGTCCATATATCCATT GCCAGATGTTTCTGAGCTGGAGTTGAAATTTTCCGAACAATCAAAAATATT
genomic: TGCAGATGTTCAGATTCAGTCCATATATCCATTgtaaaaattt ... ctattttcagGCCAGATGTTTCTGAGCTGGAGTTGAAATTTTCCGAACAATCAAAAATATT
gaaattctatttcatgagatgtagtaacattctggctttttcaaactattttcagGCCAGATGTTTCTGAGCTGGAGTTGAAATTTTCCGAACAATCAAAAATATTGTTGAATCTTCAACAAAAAGTTGATGACTTGGCATCCAAG
tagtaac putative branch site (score: 1)
ctattttc putative PPT
tttttcaaactatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgggaattcatttgatggaaattatttatcttttgctagtaaaagaaattctatttcatgagatgtagtaacattctggctttttcaaactattttcagGCCAGATGTTTCTGAGCTGGAGTTGAAATTTTCCGAACAATCAAAAATATTGTTGAATCTTCAACAAAAAGTTGATGACTTGGCATCCAAG
- - - - - - ttgatgg
- - - - - - - - - - - - - - - cttttgc
- - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctggc