1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccttataaactattctcaagtgagaaatgctaataacactaatttgtccgataacagctcactttatgacagaatttaacactccgtttttaaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTG
species | Glycine max |
transcript | GLYMA20G28720.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCEST: gi|14990114|gb|BI315787.1|BI315787
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCEST: gi|24135390|gb|BU925900.1|BU925900
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG GCAACAAGTAAACCAGGACTTGTATATCCCAACAGTGGGEST: gi|192306173|gb|FG996815.1|FG996815
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGG
EST: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCEST: gi|6848389|gb|AW350679.1|AW350679
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCEST: gi|151407441|gb|EV277256.1|EV277256
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG GCAACAAGTAAACCAGTACTTGTATATCCCAGCAGTGGGGAGACTTATATCEST: gi|22541388|gb|BU091231.1|BU091231
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCEST: gi|22541423|gb|BU091266.1|BU091266
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCEST: gi|15814658|gb|BI786933.1|BI786933
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG GCAACAAGTAAACCAGTACTTGTATATCCCEST: gi|192334698|gb|FK025231.1|FK025231
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCC
EST: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCEST: gi|6566795|gb|AW234427.1|AW234427
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCEST: gi|151406337|gb|EV276152.1|EV276152
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCEST: gi|58018094|gb|CX704836.1|CX704836
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCEST: gi|192334699|gb|FK025232.1|FK025232
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
gtccgataacagctcactttatgacagaatttaacactccgtttttaaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTG
atttaac putative branch site (score: 3)
ctccgttttt CT-rich tract
tttttaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttataaactattctcaagtgagaaatgctaataacactaatttgtccgataacagctcactttatgacagaatttaacactccgtttttaaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA