1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgaaagctaactgacacccttatttttgtgactatttaaactgactgatgatttttgggggggaaattgaaataagttctaatataacatgcttctttgtttttgctttttgctggtggcagATAGTTGAGAAGATAACTGGATTTGGAATGTCTCTATCACAAGATTTTCTTGCTGAAGCCAAAAGAAAATTACAAGTACTAGATCAAAAAGATGCAGACA
species | Glycine max |
transcript | GLYMA20G16070.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGCTACAGAGAAAAAGCTGAAAAGGCAGACTTTTAGGGTACCATTAAAG ATAGTTGAGAAGATAACTGGATTTGGAATGTCTCTATCACAAGATTTTCTTEST: gi|193410716|gb|FK378887.1|FK378887
genomic: CTGCTACAGAGAAAAAGCTGAAAAGGCAGACTTTTAGGGTACCATTAAAGgtgaaagcta ... ctggtggcagATAGTTGAGAAGATAACTGGATTTGGAATGTCTCTATCACAAGATTTTCTT
EST: CTGCTACAGAGAAAAAGCTGAAAAGGCAGACTTTTAGGGTACCATTAAAG ATAGTTGAGAAGATAA
genomic: CTGCTACAGAGAAAAAGCTGAAAAGGCAGACTTTTAGGGTACCATTAAAGgtgaaagcta ... ctggtggcagATAGTTGAGAAGATAA
tgaaataagttctaatataacatgcttctttgtttttgctttttgctggtggcagATAGTTGAGAAGATAACTGGATTTGGAATGTCTCTATCACAAGATTTTCTTGCTGAAGCCAAAAGAAAATTACAAGTACTAGATCAAAAAGATGCAGACA
cttctttgtttttgct CT-rich tract
taagttctaatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaagctaactgacacccttatttttgtgactatttaaactgactgatgatttttgggggggaaattgaaataagttctaatataacatgcttctttgtttttgctttttgctggtggcagATAGTTGAGAAGATAACTGGATTTGGAATGTCTCTATCACAAGATTTTCTTGCTGAAGCCAAAAGAAAATTACAAGTACTAGATCAAAAAGATGCAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG