1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ttgtctttacattttcttttacattttatggttcctgtttattatccagaaatctagtactgattgtattgatatgactgcatctgcttccttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTCGAGAAGCCTTTTGGTAAGGATCTAGAATCTGCAGAGGAACTCAGTACTGAGATTGGAAAGTTGTTTGA
species | Glycine max |
transcript | GLYMA19G24250.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTATATCCATCTGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAAT CTGATCTTGGTGGATGGACACGTGTTGTTGTCGAGAAGCCTTTTGGTAAGGEST: gi|18040428|gb|BM308722.1|BM308722
genomic: AGTATATCCATCTGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAATgtaagatgct ... cttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTCGAGAAGCCTTTTGGTAAGG
EST: AGTATATCCATCAGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAAT CTGATCTTGGTGGATGGACACGTGTTGTTGTTGAGAAACCTTTTGGTAAGGEST: gi|5688182|gb|AI941197.1|AI941197
genomic: AGTATATCCATCTGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAATgtaagatgct ... cttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTCGAGAAGCCTTTTGGTAAGG
EST: GTATATCCATCTGTTTGCAAGATGATCAAGAACTTGT-GCATGAATAAAT CTGATCTTGGTGGATGGACACGTGTNGTTGTCGAGAAGCCTTTTGGTAEST: gi|213611006|gb|DB970933.1|DB970933
genomic: GTATATCCATCTGTTTGCAAGATGATCAAGA-CTTGTTGCATGAATAAATgtaagatgct ... cttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTCGAGAAGCCTTTTGGTA
EST: AGTATATCCATCTGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAAT CTGATCTTGGTGGATGGACACGTGTTGTTGTCGAGAAGCCTTTTGGTA-GGEST: gi|16279238|gb|BI943331.1|BI943331
genomic: AGTATATCCATCTGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAATgtaagatgct ... cttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTCGAGAAGCCTTTTGGTAAGG
EST: AGTATATCCATCAGTTTGCAAGAT-ATCAAGACTTGTTGCATGAATAAAT CTGATCTTGGTGGATGGACACGTGTTGTTGTTGAGAAACCTTTTGGTAAGGEST: gi|254334914|gb|GR844699.1|GR844699
genomic: AGTATATCCATCTGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAATgtaagatgct ... cttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTCGAGAAGCCTTTTGGTAAGG
EST: AGTATATCCATCTGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAAT CTGATCTTGGTGGATGGACACGTGTTGTTGTCGAGAAGCCTTTTGGTAAGG
genomic: AGTATATCCATCTGTTTGCAAGATGATCAAGACTTGTTGCATGAATAAATgtaagatgct ... cttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTCGAGAAGCCTTTTGGTAAGG
ccagaaatctagtactgattgtattgatatgactgcatctgcttccttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTCGAGAAGCCTTTTGGTAAGGATCTAGAATCTGCAGAGGAACTCAGTACTGAGATTGGAAAGTTGTTTGA
ctgcatctgcttcctt CT-rich tract
tattgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtctttacattttcttttacattttatggttcctgtttattatccagaaatctagtactgattgtattgatatgactgcatctgcttccttttcttagCTGATCTTGGTGGATGGACACGTGTTGTTGTCGAGAAGCCTTTTGGTAAGGATCTAGAATCTGCAGAGGAACTCAGTACTGAGATTGGAAAGTTGTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA