1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atatatttagtgttacacttaatccatttttctattttttactttttaacttctgaaattggtgtcaacgatcgtttaatcatggttcatattgtttcagACTTCCCTTCACCAGCCCCGGCACGGTCAACGTATCAAGTAGCTTCCTTGCCAATGGATGCCAAGATTGAAATTGAGTGCATAGCAGCACTTTGA
species | Glycine max |
transcript | GLYMA18G11100.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAAT ACTTCCCTTCACCAGCCCCGGCAEST: gi|298166155|gb|HO009126.1|HO009126
genomic: GTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAATgtgagtaact ... attgtttcagACTTCCCTTCACCAGCCCCGGCA
EST: GTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAAT ACTTCCCTTCACCAGCCCCGGCACGGTCAACGTATCAAGTAGCTTEST: gi|298179458|gb|HO027929.1|HO027929
genomic: GTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAATgtgagtaact ... attgtttcagACTTCCCTTCACCAGCCCCGGCACGGTCAACGTATCAAGTAGCTT
EST: GTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAAT ACTTCCCTTCACCAGCCCCGGCACGGTCAACGTATCAAGTAGCTTCEST: gi|298178386|gb|HO024121.1|HO024121
genomic: GTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAATgtgagtaact ... attgtttcagACTTCCCTTCACCAGCCCCGGCACGGTCAACGTATCAAGTAGCTTC
EST: GTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAAT ACTTCCCTTCACCAGCCCCGGCACGGTCAACGTATCAAGTA
genomic: GTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAATgtgagtaact ... attgtttcagACTTCCCTTCACCAGCCCCGGCACGGTCAACGTATCAAGTA
ttaacttctgaaattggtgtcaacgatcgtttaatcatggttcatattgtttcagACTTCCCTTCACCAGCCCCGGCACGGTCAACGTATCAAGTAGCTTCCTTGCCAATGGATGCCAAGATTGAAATTGAGTGCATAGCAGCACTTTGA
ttgtttc CT-rich tract
tttaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatatttagtgttacacttaatccatttttctattttttactttttaacttctgaaattggtgtcaacgatcgtttaatcatggttcatattgtttcagACTTCCCTTCACCAGCCCCGGCACGGTCAACGTATCAAGTAGCTTCCTTGCCAATGGATGCCAAGATTGAAATTGAGTGCATAGCAGCACTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - acttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgtc