1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gctaataagatcaaattactattaaatgtttcctttagttcaatttaatataagcaaatcaacttatcattgagtttctaagttaatttctattgtcacaGCCGCATGGAATCAATTGTCAGCAGAATCTTGCAAAGGAATGTGAAGAGGAAGCAGGAATACCTAGATCTATCTCTGTCA
species | Glycine max |
transcript | GLYMA18G08420.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATGAGCTAGTTGCAGGAGGACT GCCGCATGGAATCAATTGTCAGCAGAATCTTGCAAAGGAATGTGAAGAGGAEST: gi|151400323|gb|EV270137.1|EV270137
genomic: GATGAGCTAGTTGCAGGAGGACTggtttgtagt ... tattgtcacaGCCGCATGGAATCAATTGTCAGCAGAATCTTGCAAAGGAATGTGAAGAGGA
EST: ACAAA-TCCACATATCCTGGAATGCTTGATGAGCTAGTTGCAG-AG-ACT GCCGCATGGAATCAATTGTCAGCAGAATCTTGCAA
genomic: ACAAAATCCACATATCCTGGAATGCTTGATGAGCTAGTTGCAGGAGGACTggtttgtagt ... tattgtcacaGCCGCATGGAATCAATTGTCAGCAGAATCTTGCAA
taatataagcaaatcaacttatcattgagtttctaagttaatttctattgtcacaGCCGCATGGAATCAATTGTCAGCAGAATCTTGCAAAGGAATGTGAAGAGGAAGCAGGAATACCTAGATCTATCTCTGTCA
agttaat putative branch site (score: 4)
tttctatt CT-rich tract
taagttaatttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctaataagatcaaattactattaaatgtttcctttagttcaatttaatataagcaaatcaacttatcattgagtttctaagttaatttctattgtcacaGCCGCATGGAATCAATTGTCAGCAGAATCTTGCAAAGGAATGTGAAGAGGAAGCAGGAATACCTAGATCTATCTCTGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - tgtttcc