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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcatttactcttttttttctttggcatattaattttcttaaaaaaaaattgtcatatttttataatgggtaactactaactactgggggtgggggtggttgatcgatactttattgatttaaatttgttgatatctattgcttattagttcacattcttattggtcctatttactatattctagAGGGTCACCTCTCTTCTGGATTGGTGTTGGTGTTGGGCTTTCTGCACTGTTTTCAGTG

Basic information

species Glycine max
transcript GLYMA18G05480.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G05480.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G16620.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaatcatttactcttttttttctttggcatattaattttcttaaaaaaaaattgtcatatttttataatgggtaactactaactactgggggtgggggtggttgatcgatactttattgatttaaatttgttg-atatctattgcttattagttcacattcttattggtcctatttactatattctagAGGGTCACCTCTCTTCTGGATTGGTGTTGGTGTTGGGCTTTCTGCACTGTTTTCAGTG
                                                                                                  ||  ||   |     ||     || |   |   ||| || ||  ||| || || |||   |||    |  ||  | | |  | | || |||||| ||||| || ||||||||||||||||||||||| || || ||  |||| |||   
--------------------------------------------------------------------------------------------------gtaattttcctggttttggacaatgtgcttagtttgtatgtcgtttgattcttggtt---attaaattgtgttttttcttttttcttgtagAGGATCACCACTTTTCTGGATTGGTGTTGGTGTTGGTCTATCAGCTTTGTTCTCATAT

upper sequence: GLYMA18G05480.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0041g01360.t01 (Vitis vinifera), 3'ss of exon 2
gtaatcatttactcttttttttctttggcatattaattttcttaaaaaaaaattgtcatatttttataatgggtaactactaactactgggggtgggggtggttgatcgatactttattgatttaaatttgttgatatctattgcttattagttcacattcttattggtcctatttactatatt-ctagAGGGTCACCTCTCTTCTGGATTGGTGTTGGTGTTGGGCTTTCTGCACTGTTTTCAGTG
|||||  |   ||     | |||| |   || ||  |||   | |  |||| ||   ||| |||| |      |   |  |   |  |              ||  |   | ||| |||   | |  ||| | |  |  | ||  ||  || || | ||  ||  ||  | | || | ||| || ||||||||||||||||||| |||||||| |||||||||||||| || ||||| ||||||  |
gtaattttcctctacacctattctcttttat-ttcgtttgtgtgaggaaaacttaagatacttttttttcctttccttttttttttttt-------------tttctttttccttcatttgatgaccttt-taggcacttcttcattgata-ttgatatgttttgtgaactt-ttcattatttttctagAGGGTCACCTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTTTTCATGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatatctattgcttattagttcacattcttattggtcctatttactatattctagAGGGTCACCTCTCTTCTGGATTGGTGTTGGTGTTGGGCTTTCTGCACTGTTTTCAGTG
 tgttgat  putative branch site (score: 4)
                                      tatttactatattcta  TA-rich tract