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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggcgtaggcctattaacatttattaatttacttgcagattttcagAATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAGAATTACCCTGAGTCAAGGTCAATTTTGTCAAGAATAA

Basic information

species Glycine max
transcript GLYMA18G01230.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G01230.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G67580.1 (Arabidopsis thaliana), 3'ss of exon 2
---------------------------------------------gtggcgta-ggcctattaac-atttattaatttacttgcagattttcagAATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAGAATTACCCTGAGTCAAGGTCAATTTTGTCAAGAATAA
                                                 | ||  || ||| ||  | |  ||  || | || |||||||||||||| ||||| || || |||||| | |||||||||||||||||  || ||||  ||||||||||||| ||||||||| || |
gtattttaaacatcggttttgatttggatctccagccatcctgggaccacatacagcttataaattactccttctttaatttacagATTTTCAGAATCCTTGGTACTCCCAATGAATCTATTTGGCCTGGGTTCTCTAAACTACCTGGAGTCAAGGTCAACTTTGTCAAGCATCA

upper sequence: GLYMA18G01230.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv01s0010g02550.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------------------------------------------------------------------------gtggcgtaggcctattaacatttatta-atttac--ttgcagattttcagAATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAGAATTACCCTGAGTCAAGGTCAATTTTGTCAAGAATAA
                                                                                               |  ||   |  |    ||     | || ||   ||||||||||| ||||  ||||||||||||| ||| ||||||||||||||||| ||  |||| ||  |||||||||| || || |||||| || |
gtaacttaactagttagcttctgcttgtgatacattaccattattgctgcccccctactgcctatatgattctacttgatatatggtgatttccagtttaattcattctgtatgaggaatatctatgattgcagATTTTTAGAACCCTTGGCACACCAAGTGAGACAATTTGGCCTGGGTTTTCCAAATTGCCTGGAGTCAAGGTTAACTTCGTCAAGCATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggcgtaggcctattaacatttattaatttacttgcagattttcagAATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAGAATTACCCTGAGTCAAGGTCAATTTTGTCAAGAATAA
                                                       ttttc  CT-rich tract
                    tattaacatttattaa  TA-rich tract