1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ttaataaacacttatctcctttgtttcatcatatcttgttttaatgctttatatgaactagatcatcttaatctgagaaaaacattccttgattctcagaTCATTAGCACTGAGTGGGGTGCTTTCTCAAATGGTCTCCCTTTAACCAAGATCGATAGGGAAATGGATGCTGCTAGCATCAATCCGGGTGAGCAGG
species | Glycine max |
transcript | GLYMA17G37720.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGTGCCATTCCTAAGTTACAGGGCCATGTCTCTTCTTCTGGGAAAATGA TCATTAGCACTGAGTGGGGTGCTTTCTCAAAATGGTCTCCCTTTAACCAAGEST: gi|193339314|gb|FK303541.1|FK303541
genomic: CAGTGCCATTCCTAAGTTACAGGGCCATGTCTCTTCTTCTGGGAAAATGGttaataaaca ... gattctcagaTCATTAGCACTGAGTGGGGTGCTTTCTCAAA-TGGTCTCCCTTTAACCAAG
EST: CAGTGCCATTCCTAAGTTACTGGGCCATGTCTCTTCTTCTGGGAAAATGA TCATTAGCACTGAGTGGGGTGCTTTCTCAAATGGTCTCCCTTTAACCAAGA
genomic: CAGTGCCATTCCTAAGTTACAGGGCCATGTCTCTTCTTCTGGGAAAATGGttaataaaca ... gattctcagaTCATTAGCACTGAGTGGGGTGCTTTCTCAAATGGTCTCCCTTTAACCAAGA
gctttatatgaactagatcatcttaatctgagaaaaacattccttgattctcagaTCATTAGCACTGAGTGGGGTGCTTTCTCAAATGGTCTCCCTTTAACCAAGATCGATAGGGAAATGGATGCTGCTAGCATCAATCCGGGTGAGCAGG
ttccttg CT-rich tract
aaaaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaataaacacttatctcctttgtttcatcatatcttgttttaatgctttatatgaactagatcatcttaatctgagaaaaacattccttgattctcagaTCATTAGCACTGAGTGGGGTGCTTTCTCAAATGGTCTCCCTTTAACCAAGATCGATAGGGAAATGGATGCTGCTAGCATCAATCCGGGTGAGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG