Sequence
atgc intronic sequence ATGC exonic sequencegtaaatatctaaaatattttaaaaatactttttaaaatttatccgattagttttgctgcatatttagattataaatatgataaattttccacttgatactgcagGCTGCGGTGCTGATATACATGTCATCGTAAAAATTGAAAGTGCAGACTCTATACCAAATTTGCATTCAATTATCACTGCATCTGATGGG
Basic information
species | Glycine max |
transcript | GLYMA16G28980.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G28980.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os01g47080.1 (Oryza sativa), 3'ss of exon 5
gtaaatatctaaaatattttaaaaatactttttaaaatttatccgattagttttgctgcatatttagattataaatatgataaattttccacttgatactgcagGCTGCGGTGCTGATATACATGTCATCGTAAAAATTGAAAGTGCAGACTCTATACCAAATTTGCATTCAATTATCACTGCATCTGATGGG
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----------gtaataattatcccctacattatgaaaattatccagc----------acttattca-actgtcttaatagtgtgttttgt-tttgattct-cagGCTCCAATGCCGATATACATGTAATTGTAAAGATTGAAAGTGCAGATTCCATTCCAAACCTACACTCAATCATCACAGCATCGGATGGG
upper sequence: GLYMA16G28980.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G152686_T01 (Zea mays), 3'ss of exon 5
gtaaatatctaaaatattttaaaaatactttttaaa--atttatccgattagttttgctgcatatttagattataaatatgataaatt--ttccacttgatactgcagGCTGCGGTGCTGATATACATGTCATCGTAAAAATTGAAAGTGCAGACTCTATACCAAATTTGCATTCAATTATCACTGCATCTGATGGG
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------------------------gtaatcttcaacccaactttgtaaaaaatcatatcatgcacctttttttacaatttactgagctcattctattctattct-cagGTTGCAATGCTGACATACATGTTATCGTAAAAATAGAAAGTGCAGACTCCATCCCCAACTTACATTCAATCATCACAGCATCTGATGGG
upper sequence: GLYMA16G28980.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G52920.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaaatatctaaaatattttaaaaatactttttaaaatttatccgattagttttgctgcatatttagattataaatatgataaattttccacttgatactgcagGCTGCGGTGCTGATATACATGTCATCGTAAAAATTGAAAGTGCAGACTCTATACCAAATTTGCATTCAATTATCACTGCATCTGATGGG
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gtaaatacttggaacctatt----ccatcctaagtgaatgatttgccta-tgatatttcctttttggtctaaccttgagattg-tttgttacaaatatttgcagATAGTGGTGCTGATATACACGTGATAGTGAAAATTGAGAGTGCAGACTCCATACCTAACTTGCACTCCATTATCACAGCATCAGATGGG
upper sequence: GLYMA16G28980.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0050g02180.t01 (Vitis vinifera), 3'ss of exon 5
gtaaatatctaaaatatt---ttaaaaatactttttaaaatttatccgattagttttgctgcatatttagattataaatatgataaattttccacttgatactgcagGCTGCGGTGCTGATATACATGTCATCGTAAAAATTGAAAGTGCAGACTCTATACCAAATTTGCATTCAATTATCACTGCATCTGATGGG
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gtaaatacttaggatattcatttggaaataactaa-ataacttgcttgatctgtaat-ttgc---ttcaaattttaccacttataatctttac-cttgtttcggcagGCTGTAATGCAGATATCCATGTCATTGTTAAAATTGAAAGTGCCGACTCCATTCCCAATCTACATTCAATTATTACCGCATCTGATGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193466016|gb|FK430205.1|FK430205EST: CTTTGTTAAGGATGCTGAAGTTGTTCATGAACTGAAGAATTATTTGAAGA GCTGCGGTGCTGATATACATGTCATCGTAAAAATTGAAAGTGCAGACTCCA
genomic: CTTTGTTAAGGATGCTGAAGTTGTTCATGAACTGAAGAATTATTTGAAGAgtaaatatct ... gatactgcagGCTGCGGTGCTGATATACATGTCATCGTAAAAATTGAAAGTGCAGACTCTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttttgctgcatatttagattataaatatgataaattttccacttgatactgcagGCTGCGGTGCTGATATACATGTCATCGTAAAAATTGAAAGTGCAGACTCTATACCAAATTTGCATTCAATTATCACTGCATCTGATGGG
acttgat putative branch site (score: 5)
atatttagattataaa TA-rich tract