1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtttcttgacaatatatatacaagtggtcttttataaaaaaaggagattctttttttggatgtatttttattcattgtaccccacttgattcttttcagTTGACGAGGCGTTGAGCCACCCATACATGTCACCTCTCCATGACATCAATGAGGAACCTGTTTGCACCAGACCTTTCAGTTTTGACTTTGAGCAACCATC
species | Glycine max |
transcript | GLYMA16G03670.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGACTTGCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGTATTACAG TTGACGAGGCGTTGAGCCACCCATACATGTCACCTCTCCATGACATCAATGEST: gi|17519494|gb|BM188536.1|BM188536
genomic: TGACTTGCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGTATTACAGgtaaaattgc ... ttcttttcagTTGACGAGGCGTTGAGCCACCCATACATGTCACCTCTCCATGACATCAATG
EST: TGACTTGCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGTATTACAG TTGACGAGGCGTTGAGCCACCCATACATGTCACCTCTCCATGACATCAATGEST: gi|254331841|gb|GR846151.1|GR846151
genomic: TGACTTGCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGTATTACAGgtaaaattgc ... ttcttttcagTTGACGAGGCGTTGAGCCACCCATACATGTCACCTCTCCATGACATCAATG
EST: TGACTTGCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGTATTACAG TTGACGAGGCGTTGAGCCACCCATACATGTCACCTCTCCATGACATCAATG
genomic: TGACTTGCTAGAGAAGATGCTCATCTTTGATCCAAACAGGCGTATTACAGgtaaaattgc ... ttcttttcagTTGACGAGGCGTTGAGCCACCCATACATGTCACCTCTCCATGACATCAATG
agattctttttttggatgtatttttattcattgtaccccacttgattcttttcagTTGACGAGGCGTTGAGCCACCCATACATGTCACCTCTCCATGACATCAATGAGGAACCTGTTTGCACCAGACCTTTCAGTTTTGACTTTGAGCAACCATC
acttgat putative branch site (score: 5)
ttcttttc CT-rich tract
tttttttggatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttcttgacaatatatatacaagtggtcttttataaaaaaaggagattctttttttggatgtatttttattcattgtaccccacttgattcttttcagTTGACGAGGCGTTGAGCCACCCATACATGTCACCTCTCCATGACATCAATGAGGAACCTGTTTGCACCAGACCTTTCAGTTTTGACTTTGAGCAACCATC
- - -cttgaca
- - - - - - - - - - -caagtgg
- - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccact