Sequence
atgc intronic sequence ATGC exonic sequencegtaatccttcttgctgtagtctgcttgttcattctagttttcatttatctgttccattccattttaaatttgacaaagtttatacttctataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACT
Basic information
species | Glycine max |
transcript | GLYMA16G01680.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G01680.2 (Glycine max), 3'ss of exon 5
lower sequence: AT1G17280.1 (Arabidopsis thaliana), 3'ss of exon 5
--gtaatcc--ttcttgctgtagtctgcttgttcattctagttttcatttatctgttccattccattttaaatttgacaaagtttatacttctataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACT
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gtatgttccaatggttcctccaaattcagtctcaacattactcttacctcattt--tttgtccagttttttaatgaaccaaatctttttctgtttgcctcagAATGACTACACCAAATGGTCGATTCATGACACAGAAGAAAATTTGTTTATCTATGAGTGATT
upper sequence: GLYMA16G01680.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv09s0002g00280.t01 (Vitis vinifera), 3'ss of exon 6
----------------------------------gtaatccttc-ttgctgtagtctgcttgttcattctagttttcatttatctgttccattccattttaaatttgacaaagtttatacttctataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACT
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gtattctgtattctggctacttcaattttcccaagaaatattctgttgcttttagcagcagtattttacttatattaatgtattcatgtagttgc-ttttaattttaatgacgttt----tcctctcttgtagCATGACCACTCCCAATGGACGGTTTATGACACAAAAGAAAATCTGCTTATCCATGAGTGATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15661834|gb|BI699205.1|BI699205EST: AGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAG CATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
genomic: -GAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGgtaatccttc ... tataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatctgttccattccattttaaatttgacaaagtttatacttctataatgtagCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACT
atttgac putative branch site (score: 4)
tacttct putative PPT
attttaaatttgacaa TA-rich tract