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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgattgttgttgtgacaaagcttaaattggttgattaatcagcaaattggtcatttaatgtggcaatttctcagGTCCTTTGTGCTCGTTATAGTGATGAGGAATTTTTCGACAATAGATGTAAAG

Basic information

species Glycine max
transcript GLYMA15G16320.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G16320.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0077g01800.t01 (Vitis vinifera), 3'ss of exon 5
------------gta-tgtgattgttgttgtgacaaagcttaaattggttgattaatcagcaaattggtc------atttaatgtggcaatttct-cagGTCCTTTGTGCTCGTTATAGTGATGAGGAATTTTTCGACAATAGATGTAAAG
            | | | |  || || || |        |     ||  |||||       |||||  ||      |     | ||  ||| | | ||||| |||||||||||||| |||||||||||||||||| | |||||||| ||||
gtggttcactttgcactatagtttttttttttggttctttgccgctgtatgatttgctcataaattattctgaaacagacggtttgtgaatgtgtgcagGTACTTTGTGCTCGTTACAGTGATGAGGAATTTTTCCAGAATAGATGCAAAG

upper sequence: GLYMA15G16320.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0077g01810.t01 (Vitis vinifera), 3'ss of exon 5
---------------------------------------gtatgtgattgttgttgtgacaaagcttaaattggttg---attaatcagcaaattggtcatttaat-gtggcaatttctcagGTCCTTTGTGCTCGTTATAGTGATGAGGAATTTTTCGACAATAGATGTAAAG
                                        |   ||  |  |  | |  |      | | |||| ||   |||| |     ||| | | ||    | ||||   ||  | |||| |||||||||||||| ||||| |||||||||||  | | |||||||||||
gtgcgtgaaatggatgattcactatgctgtaaaaatattttccatggcttctcattttcctttctattatttggctgcaaattactttattaatggattatgggtttgtggattttatttagGTGCTTTGTGCTCGTTACAGTGACGAGGAATTTTTGCAGATTAGATGTAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209708043|gb|BW657085.1|BW657085
EST:     GTTCTTCCTGAAACACTTGATGGCAAGGCTTTTGATTTTCCAGCG                         GTCCTTTGTGCTCGTTATAGTGATGAGGAATTTTTCGACAATAGATGTAAA
genomic: GTTCTTCCTGAAACACTTGATGGCAAGGCTTTTGATTTTCCAGCGgtatgtgatt ... aatttctcagGTCCTTTGTGCTCGTTATAGTGATGAGGAATTTTTCGACAATAGATGTAAA
EST: gi|31307340|gb|CD392543.1|CD392543
EST:     GTTCTTCCTGAAACACTTGATGGCAAGGCTTTTGATTTTCCAGCG                         GTCCTTTGTGCTCGTNATAGTGACGAGGAATTTTTCGACAATAGATGTAAA
genomic: GTTCTTCCTGAAACACTTGATGGCAAGGCTTTTGATTTTCCAGCGgtatgtgatt ... aatttctcagGTCCTTTGTGCTCGTTATAGTGATGAGGAATTTTTCGACAATAGATGTAAA
EST: gi|14991401|gb|BI317074.1|BI317074
EST:     GTTCTTCCTGAAACACTTGATGGCAAGGCTTTTGATTTTCCAGCG                         GTCCTTTGTGCTCGTTATAGTGATGAGGAATTTTTCGACAATAGATGTAAA
genomic: GTTCTTCCTGAAACACTTGATGGCAAGGCTTTTGATTTTCCAGCGgtatgtgatt ... aatttctcagGTCCTTTGTGCTCGTTATAGTGATGAGGAATTTTTCGACAATAGATGTAAA
EST: gi|9819601|gb|BE555114.1|BE555114
EST:     GTTCTTCCTGAAACACTTGATGGCAAGGCTTTTGATTTTCCAGCG                         GTCCTTTGTGCTCGTTATAGTGATGAGGAATTTTTCGACAATAGATGTAAA
genomic: GTTCTTCCTGAAACACTTGATGGCAAGGCTTTTGATTTTCCAGCGgtatgtgatt ... aatttctcagGTCCTTTGTGCTCGTTATAGTGATGAGGAATTTTTCGACAATAGATGTAAA
EST: gi|31475024|gb|CD417052.1|CD417052
EST:     GTTCTTCCTGAAACACTTGATGGCAAGGCTTTTGATGTTCCAGCG                         GTCCTTTGTGCTCGTTATAGTGACGAGGAATTTTTCGACAATAGATGTAAA
genomic: GTTCTTCCTGAAACACTTGATGGCAAGGCTTTTGATTTTCCAGCGgtatgtgatt ... aatttctcagGTCCTTTGTGCTCGTTATAGTGATGAGGAATTTTTCGACAATAGATGTAAA
EST: gi|20207814|gb|BQ133903.1|BQ133903
EST:     GTTCTTCCTGAAACACTTGATGGCAAGGCTTTTGATTTTCCAGCG                         GTCCTTTGTGCTCGTTATAGTGATGAGGAATTTTTCGACAATAGATGTAAA
genomic: GTTCTTCCTGAAACACTTGATGGCAAGGCTTTTGATTTTCCAGCGgtatgtgatt ... aatttctcagGTCCTTTGTGCTCGTTATAGTGATGAGGAATTTTTCGACAATAGATGTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttaaattggttgattaatcagcaaattggtcatttaatgtggcaatttctcagGTCCTTTGTGCTCGTTATAGTGATGAGGAATTTTTCGACAATAGATGTAAAG
                                               tttctc  CT-rich tract
           ttgattaat  TA-rich tract