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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcaataagcccacaaattttggcattctctttagaccctgtcccatattttattccttaaatttagtcatggtcatctctcaagaaaaaaatatatttttattttcccttttagGCAGAGGTTTTATATAAGCTTATAGAAGATTGTGCTGGAGTCAGGGGTGATGGCTCAGAAATTGTCCTTGACCTGTTTTGTGGAACAGGCACAATAGGTT

Basic information

species Glycine max
transcript GLYMA15G02550.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G02550.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G115198_T02 (Zea mays), 3'ss of exon 5
----gtttgcaataagcccacaaattttggcattctctttagaccctgtcccatattttattccttaaatttagtcatggtcatctctcaagaaaaaaatatatttttattttcccttttagGCAGAGGTTTTATATAAGCTTATAGAAGATTGTGCTGGAGTCAGGGGTGATGGCTCAGAAATTGTCCTTGACCTGTTTTGTGGAACAGGCACAATAGGTT
       ||  | |  ||   ||||      | |    || ||     |  |   |  |  |  ||||   |  ||   | | ||||                 ||| | ||   |||  |||| || ||| | || |||||||| ||||||| ||||||  | |  || |||||||| |||||||| ||||| |||||||||||||| || || || ||||
gtatagatgagaaagaccagtaaatggaaaaaatgaactttgaaatgatgtcccttcctggtgtttaa---tgatctgagccctctcc----------------tttgactt---cttgcagGCTGATGTTCTTTACAAGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGATGGCTCTGAAATTGTTCTTGATCTGTTTTGTGGAACTGGAACCATTGGTT

upper sequence: GLYMA15G02550.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv09s0002g02670.t01 (Vitis vinifera), 3'ss of exon 6
----------------------gtttgcaataagcccaca--aattttggcattctctttagaccctgtcccatattttattccttaaatttagtcatggtcatctctcaagaaaaaaatatatttttattttcccttttagGCAGAGGTTTTATATAAGCTTATAGAAGATTGTGCTGGAGTCAGGGGTGATGGCTCAGAAATTGTCCTTGACCTGTTTTGTGGAACAGGCACAATAGGTT
                       | | |  | ||| ||      |||||  ||||| |    |   | || ||  |||  || | ||  |    |  |||   |  ||  | |  ||| | ||    | || |    || ||||||||||  | ||||| ||||||||||||||||||||  | || ||||| ||||| |||||||| |||||||||||||||||||| || || || ||| 
gtatgctgcatgatgaaattgaatgtactgtcagctcatgctggttttgatattctgtccctatagtctctcac-tttagtttcctatctagctttttggatgttccttgatagcaaattctaagact-ttataatgttcagGCAGAGGTGCTGTATAAACTTATAGAAGATTGTGCTGGTCTTAGAGGTGACGGCTCTGAAATTGTTCTTGACCTGTTTTGTGGAACTGGAACCATTGGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttagtcatggtcatctctcaagaaaaaaatatatttttattttcccttttagGCAGAGGTTTTATATAAGCTTATAGAAGATTGTGCTGGAGTCAGGGGTGATGGCTCAGAAATTGTCCTTGACCTGTTTTGTGGAACAGGCACAATAGGTT
                                tatatttttattttcc  CT-rich tract
                    tcaagaaaaaaatata  TA-rich tract