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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtctacttgtctatgtaatgataatctaaatgtctctcatagtatcagatcagctattgttgtttttatatagtcttactaagttcttgaataaatggttcttgatagGGAAATCAATATCTCCCAACTAAGATACCTTTGATGTCTGTGCGGCCTTTTAAGTATACTGAG

Basic information

species Glycine max
transcript GLYMA14G12420.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G12420.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G54260.1 (Arabidopsis thaliana), 3'ss of exon 10
gttgtctacttgtctatgtaatgata-atctaaatgtctctcatagta-----tcagatcagctattgttgtttttatatagtcttac-----taagttcttgaataaatggttcttgatagGGAAATCAATATCTCCCAACTAAGATACCTTTGATGTCTGTGCGGCCTTTTAAGTATACTGAG
||| |  |     | || | |   |  ||||  |  |   || || |      || | ||   | |  |  |||| |   |  | |       | |||   | || | ||    ||| | |||||||||||||||  || || |||||||||||||  |||||| |||||||| ||||||| |||
gttcttcagcaaacaatctgaaatttcatcttcactttattcgtacttcattttctggtcttttttcctccttttcaatcaagcatgtaagcttgagtgacttaaaatatatgactt-acagGGAAATCAATATCGTCCTACGAAGATACCTTTGACATCTGTGAGGCCTTTTGAGTATACAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattgttgtttttatatagtcttactaagttcttgaataaatggttcttgatagGGAAATCAATATCTCCCAACTAAGATACCTTTGATGTCTGTGCGGCCTTTTAAGTATACTGAG
                   gtcttac  putative branch site (score: 3)
                                             ttctt  putative PPT
         tttttatatagtctta  TA-rich tract