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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttagcaatacgcactccccctattcctctatagacatttacttaggttcttaatttttattctttgtgacattattgtttgggtgtttatgttgcagCCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAG

Basic information

species Glycine max
transcript GLYMA14G02090.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G02090.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os02g37580.1 (Oryza sativa), 3'ss of exon 5
-----gtgagttttagcaatacgcactccccctattcctctatagacatttacttaggttcttaatttttattctttgtgacattattgtttgggtgtttatgttgcagCCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAG
      |||  | |  | | |  |||      | |  || ||| ||  | |   ||  || ||||  ||   | ||  | ||   | | | |     ||  | |||||||||||||| ||||| || ||| | |||||||||||||||
ctgacttgatgtatgtctaca-acacattttttgtgactatatgga-gtatgactaaattgttaacattg--ttttgatcactgaaatatct-----ttcttattgcagCCTCATCTAGTTCTTGGTTTGTTATCCCAAATCATAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggttcttaatttttattctttgtgacattattgtttgggtgtttatgttgcagCCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAG
     tcttaat  putative branch site (score: 3)
       ttaatttttattcttt  TA-rich tract