1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttattctctgttttttaatttgtacattcttaatttccttgatttccctttgctaaatttgccaaaatttatgcatttctgtgaggcataaaaaattaatagcaattaactagggttatcactgtcaactttaaagaggttttatagccattctaatttagacttaattttgtgtaatcattcagAAGCACAAATGTGTTCCCTTAGAAGATCTTGCTGCAGAATTTAAATTGCGTACACAG
species | Glycine max |
transcript | GLYMA13G36410.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCAGGGTAGTACTGAAGACTTGCTAGGCAATTTTGTTGAATATATAAAG AAGCACAAATGTGTTCCCTTAGAAGATCTTGCTGCAGAATTTAAATTGCGTEST: gi|23727933|gb|BU762006.1|BU762006
genomic: TGCAGGGTAGTACTGAAGACTTGCTAGGCAATTTTGTTGAATATATAAAGgttattctct ... aatcattcagAAGCACAAATGTGTTCCCTTAGAAGATCTTGCTGCAGAATTTAAATTGCGT
EST: TGCAGGGTAGTACTGAAGACTTGCTAGGCAATTTTGTTGAATATATAAAG AAGCACAAATGEST: gi|51335568|gb|CO979434.1|CO979434
genomic: TGCAGGGTAGTACTGAAGACTTGCTAGGCAATTTTGTTGAATATATAAAGgttattctct ... aatcattcagAAGCACAAATG
EST: TGCAGGGTAGTACTGAAGACTTGCTAGGCAATTTTGTTGAATATATAAAG AAGCACAAATGTGTTCCCTTAGAAGATCTTGCTGCAGAATTTAAATTGCGT
genomic: TGCAGGGTAGTACTGAAGACTTGCTAGGCAATTTTGTTGAATATATAAAGgttattctct ... aatcattcagAAGCACAAATGTGTTCCCTTAGAAGATCTTGCTGCAGAATTTAAATTGCGT
ttaaagaggttttatagccattctaatttagacttaattttgtgtaatcattcagAAGCACAAATGTGTTCCCTTAGAAGATCTTGCTGCAGAATTTAAATTGCGTACACAG
attctaatttagactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattctctgttttttaatttgtacattcttaatttccttgatttccctttgctaaatttgccaaaatttatgcatttctgtgaggcataaaaaattaatagcaattaactagggttatcactgtcaactttaaagaggttttatagccattctaatttagacttaattttgtgtaatcattcagAAGCACAAATGTGTTCCCTTAGAAGATCTTGCTGCAGAATTTAAATTGCGTACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG