Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaacaaatataactatcttagctaaatttctaaagcagtaaatatgactttccataatcttttgagcgaaaataagttcttattatatggctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTGAGAGAACTGCTACAACAAGATCCTGGTCTTGCTAGGCAAATCATGTCTA

Basic information

species Glycine max
transcript GLYMA13G26710.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G26710.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv11s0065g00480.t01 (Vitis vinifera), 3'ss of exon 5
---aaacaaatataactatcttagctaaatttctaaagcagtaaatatgactttcca-taatcttttgagcgaaaataagttcttattatatggctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTGAGAGAACTGCTACAACAAGATCCTGGTCTTGCTAGGCAAATCATGTCTA
        | | |   | ||  |    |   |||| | |   |||  ||  | ||   | |   |||||  |||| |||| | || ||  | |   ||| |||||  || || |||||||| || || |||||||||||||| || | |||  |||| || ||||| || |||||||| ||||||||| | ||||||||||| |
ggggcttgagtttggatctcacaagctacagtctacaaccacaaacttgtatctctggtgaaaatttgattgaaactaagat-ttgttgcacg---ttggacagACTTCCAAGGAATACTTAGAGAAGCAGATGGCAGAGGTAGAGAACAACCTGAGGGAGCTGCTGCAGCAAGATCCAGGTCTTGCTCGTCAAATCATGTCGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192319541|gb|FK009523.1|FK009523
EST:     AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|151394166|gb|EV264037.1|EV264037
EST:     AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|192329581|gb|FK021895.1|FK021895
EST:     AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|192298036|gb|FG991316.1|FG991316
EST:     AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|16283388|gb|BI945525.1|BI945525
EST:     AACAGGAGCCCCAGTTTAAGGATGGTGAAGCTTCCATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|209701595|gb|BW673120.1|BW673120
EST:     AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|192319540|gb|FK009522.1|FK009522
EST:     AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|6667399|gb|AW278850.1|AW278850
EST:     GGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: GGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|193668079|gb|FK610651.1|FK610651
EST:     AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|298178713|gb|HO024448.1|HO024448
EST:     AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|151399303|gb|EV269174.1|EV269174
EST:     AACAGGAGACCAAGTTTAAGGATGGTGAAGCCTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|7589440|gb|AW705214.1|AW705214
EST:     GGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: GGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|192307367|gb|FK000737.1|FK000737
EST:     AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|209701596|gb|BW673121.1|BW673121
EST:     AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|192319721|gb|FK013763.1|FK013763
EST:     AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|192319722|gb|FK013764.1|FK013764
EST:     AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|192333205|gb|FK026086.1|FK026086
EST:     AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|192326228|gb|FK017005.1|FK017005
EST:     AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
EST: gi|192309697|gb|FK000233.1|FK000233
EST:     AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAG                         AGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG
genomic: AACAGGAGACCAAGTTTAAGGATGGTGAAGCTTCAATTACTGCATTACAGgtatatgtcc ... ctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactttccataatcttttgagcgaaaataagttcttattatatggctttgaacagAGCTCAAAAGAATACTTGGAAAAACAGATGGCAGAGGTGGAAACCAATTTGAGAGAACTGCTACAACAAGATCCTGGTCTTGCTAGGCAAATCATGTCTA
                       aaaataagttcttatt  TA-rich tract