Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttatttattcgatatatatatcttttattttgctacccattgcaaatattcatgctacattctctcttgtaatgaaatctgaacaaattataatgcagCCATGTTCAGTTGGCTGCTACAGCTTTGCCTATAACAGGAACTCAAGCAGCGCCCAAGAAAGTTACAAAGGATGAACTAGGTAATGTAGCAGGAATTGCA

Basic information

species Glycine max
transcript GLYMA13G23700.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320386|gb|GR826403.1|GR826403
EST:     AATCGATTACAGAACTTGAAAGAAGCTGCAAAA-TTGGTGCTTTACCAAG                         CCATGTTCAGTTGGCTGCTACAGCTTTGCCTATAACAGGAACTCAAGCAGC
genomic: AATCGATTACAGAACTTGAAAGAAGCTGCAAAATTTGGTGCTTTACCAAGgtttgtcaag ... tataatgcagCCATGTTCAGTTGGCTGCTACAGCTTTGCCTATAACAGGAACTCAAGCAGC
EST: gi|207826496|gb|GD798193.1|GD798193
EST:     AAAATTTGGTGCTTTACCTAAG                         CCATGTTCAGTTGGCTGCTACAGCTTTGCCTATAACAGGAACTCAAGCAG
genomic: AAAATTTGGTGCTTTACC-AAGgtttgtcaag ... tataatgcagCCATGTTCAGTTGGCTGCTACAGCTTTGCCTATAACAGGAACTCAAGCAG
EST: gi|208039255|gb|GD832341.1|GD832341
EST:     AAAATTTGGTGCTTTACCAAG                         CCATGTTCAGTTGGCTGCTACAGCTTTGCCTATAACAGGAACTCAAGCAGC
genomic: AAAATTTGGTGCTTTACCAAGgtttgtcaag ... tataatgcagCCATGTTCAGTTGGCTGCTACAGCTTTGCCTATAACAGGAACTCAAGCAGC
EST: gi|15204065|gb|BI426833.1|BI426833
EST:     AATCGATTACAGAACTTGAAAGAAGCTGCAAAATTTGGTGCTTTACCAAG                         CCATGTTCAGTTGGCTGCTACAGCTTTGCCTATAACAGGAACTCAAGCAGC
genomic: AATCGATTACAGAACTTGAAAGAAGCTGCAAAATTTGGTGCTTTACCAAGgtttgtcaag ... tataatgcagCCATGTTCAGTTGGCTGCTACAGCTTTGCCTATAACAGGAACTCAAGCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatattcatgctacattctctcttgtaatgaaatctgaacaaattataatgcagCCATGTTCAGTTGGCTGCTACAGCTTTGCCTATAACAGGAACTCAAGCAGCGCCCAAGAAAGTTACAAAGGATGAACTAGGTAATGTAGCAGGAATTGCA
                                    tgaacaaattataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atttatttattcgatatatatatcttttattttgctacccattgcaaatattcatgctacattctctcttgtaatgaaatctgaacaaattataatgcagCCATGTTCAGTTGGCTGCTACAGCTTTGCCTATAACAGGAACTCAAGCAGCGCCCAAGAAAGTTACAAAGGATGAACTAGGTAATGTAGCAGGAATTGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - tgctacc
- - - - - - - - - - - - - - - - - - - -cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgaac