1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agtgatgatattcttgcgtgaataaaaattcttttgtagaatattttctgtgcaaatgcttttcctttcctatagtgacaaatatggcgccatttcatagATAATGGAAGTTCCTAGTCTTTTGGAAGAAGGATCTACAGCAGTTAAAAGGAATATTCTAAAGCAACAACAACAACCCCAAGCATCCGAATTTGGTGGTT
species | Glycine max |
transcript | GLYMA13G20970.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCAAAACTCGAGAAAATGTGGAGCGGTGCTTCGAGGAACTTGCACTAAAG ATAATGGAAGTTCCTAGTCTTTTGGAAGAAGGATCTACAGCAGTTAAAAGGEST: gi|15201651|gb|BI424985.1|BI424985
genomic: CCAAAACTCGAGAAAATGTGGAGCGGTGCTTCGAGGAACTTGCACTAAAGgtatgatttt ... catttcatagATAATGGAAGTTCCTAGTCTTTTGGAAGAAGGATCTACAGCAGTTAAAAGG
EST: CCAAAACTCGAGAAAATGTGGAGCGGTGCTTCGAGGAACTTGCACTAAAG ATAATGGAAGTTCCTAGTCTTTTGGAAGAAGGATCTACAGCAGTTAAAAGGEST: gi|192303748|gb|FG998674.1|FG998674
genomic: CCAAAACTCGAGAAAATGTGGAGCGGTGCTTCGAGGAACTTGCACTAAAGgtatgatttt ... catttcatagATAATGGAAGTTCCTAGTCTTTTGGAAGAAGGATCTACAGCAGTTAAAAGG
EST: CCAAAACTCGAGAAAATGTGGAGCGGTGCTTCGAGGAACTTGCACTAAAG ATAATGGAAGTTCCTAGTCTTTTGGAAGAAGGATCTACAGCAGTTAAAAGGEST: gi|58018762|gb|CX705504.1|CX705504
genomic: CCAAAACTCGAGAAAATGTGGAGCGGTGCTTCGAGGAACTTGCACTAAAGgtatgatttt ... catttcatagATAATGGAAGTTCCTAGTCTTTTGGAAGAAGGATCTACAGCAGTTAAAAGG
EST: CCAAAACTCGAGAAAATGTGGAGCGGTGCTTCGAGGAACTTGCACTAAAG ATAATGGAAGTTCCTAGTCTTTTGGAAGAAGGATTTACAGCAGTTAAAAGG
genomic: CCAAAACTCGAGAAAATGTGGAGCGGTGCTTCGAGGAACTTGCACTAAAGgtatgatttt ... catttcatagATAATGGAAGTTCCTAGTCTTTTGGAAGAAGGATCTACAGCAGTTAAAAGG
ttctgtgcaaatgcttttcctttcctatagtgacaaatatggcgccatttcatagATAATGGAAGTTCCTAGTCTTTTGGAAGAAGGATCTACAGCAGTTAAAAGGAATATTCTAAAGCAACAACAACAACCCCAAGCATCCGAATTTGGTGGTT
ccatttc CT-rich tract
acaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgatgatattcttgcgtgaataaaaattcttttgtagaatattttctgtgcaaatgcttttcctttcctatagtgacaaatatggcgccatttcatagATAATGGAAGTTCCTAGTCTTTTGGAAGAAGGATCTACAGCAGTTAAAAGGAATATTCTAAAGCAACAACAACAACCCCAAGCATCCGAATTTGGTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- tgatgat
- - - - - ttcttgc
- - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - tctgtgc