Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcagaagcaaccccatcgccattgaattttttgtacattgaattcttttttgttttttctttagctttataattgacagcattaatatgtcaattatacagCTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAG

Basic information

species Glycine max
transcript GLYMA12G35510.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11688820|gb|BF596496.1|BF596496
EST:     TGCTGTTGATTATCTACACAGTGAAGGAAAAATTCATAGAGACATTAAAG                         CTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAG
genomic: TGCTGTTGATTATCTACACAGTGAAGGAAAAATTCATAGAGACATTAAAGgtatcagaag ... aattatacagCTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAG
EST: gi|9899540|gb|BE608508.1|BE608508
EST:     TGCTGTTGATTATCTACACAGTGAAGGAAAAATTCATAGAGACATTAAAG                         CTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAG
genomic: TGCTGTTGATTATCTACACAGTGAAGGAAAAATTCATAGAGACATTAAAGgtatcagaag ... aattatacagCTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgttttttctttagctttataattgacagcattaatatgtcaattatacagCTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAG
                                 cattaat  putative branch site (score: 3)
      ttttttctttagcttt  TA-rich tract