Sequence
atgc intronic sequence ATGC exonic sequencegtgattttgaagaatccttgtttctcatgtttgaactgttgtgttcttgtgtagGTTGTGAGTGATCCAAGCCTGACAAAATCAGGTGTTTACTGGAGCTGGAATGCAGCCTCTGCTTCGTTTGAAAACCAATTGTCCCAAGAGGCCAGCGATG
Basic information
species | Glycine max |
transcript | GLYMA12G23140.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G23140.1 (Glycine max), 3'ss of exon 5
lower sequence: AT4G27440.1 (Arabidopsis thaliana), 3'ss of exon 3
----------------------------------gtgattttgaagaatccttgtttctcatgt--ttgaactgttgtgttct---tgtgtagGTTGTGAGTGATCCAAGCCTGACAAAATCAGGTGTTTACTGGAGCTGGAATGCAGCCTCTGCTTCGTTTGAAAACCAATTGTCCCAAGAGGCCAGCGATG
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gtaatatagaagatagtgttgtttttgtagcttgttaatcaaggaaagacttttcttgctgtgtactcaagccatagagttttgtttgatcagGTGGTGAGTGATCCAAGCTTGACGAAATCAGGGGTTTATTGGAGCTGGAACAATGCTTCGGCTTCTTTTGAGAACCAGTTATCAGAAGAAGCAAGTGACG
upper sequence: GLYMA12G23140.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv19s0014g03160.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------gtgatt--ttgaagaatccttgtttctcatgtttgaactgttgtgttcttgtgtagGTTGTGAGTGATCCAAGCCTGACAAAATCAGGTGTTTACTGGAGCTGGAATGCAGCCTCTGCTTCGTTTGAAAACCAATTGTCCCAAGAGGCCAGCGATG
| ||| | || | | | | | ||||| ||||| || | | |||||||| ||||| |||||| ||||||| |||||||| |||||||||||||| ||| ||||| ||||| ||||| ||||| || || || || ||||
gtaagagaaaaaggacttaccctttgttaataattgatcgagggaag---ggggcataaatttga-ttgttggtttatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAACAAGAACTCAGCTTCATTTGAGAACCAGTTGTCTCAGGAAGCTAGTGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgattttgaagaatccttgtttctcatgtttgaactgttgtgttcttgtgtagGTTGTGAGTGATCCAAGCCTGACAAAATCAGGTGTTTACTGGAGCTGGAATGCAGCCTCTGCTTCGTTTGAAAACCAATTGTCCCAAGAGGCCAGCGATG
tgttctt CT-rich tract
ttttgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgattttgaagaatccttgtttctcatgtttgaactgttgtgttcttgtgtagGTTGTGAGTGATCCAAGCCTGACAAAATCAGGTGTTTACTGGAGCTGGAATGCAGCCTCTGCTTCGTTTGAAAACCAATTGTCCCAAGAGGCCAGCGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG