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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatataagtactttccatcctactataatactgtcaagaaaaataagtaaattacttaagatatgttcaaaactaaaatttgagtttccatattggagaaagatagtataataatacataattggtattatgctttatgcagAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGAACATTACCCCCTGGATTAATAGCATTCCATGGTCATGTCCACACTATTGATCCTTTCTGGCACA

Basic information

species Glycine max
transcript GLYMA12G16550.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G16550.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv19s0014g05130.t01 (Vitis vinifera), 3'ss of exon 5
gtatatataagtactttccatcctactataatactgtcaagaaaaataagtaaattacttaagatatgttcaaaactaaaatttgagtttccatattggagaaagatagtataataatacataattggtattatgctttatgcagAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGAACATTACCCCCTGGATTAATAGCATTCCATGGTCATGTCCACACTATTGATCCTTTCTGGCACA
       || | | |||   ||   | | | ||  | |   |||| | | |    | | ||||   | ||   | || ||| |   |     | |||    |   ||||| |   ||   ||       ||| |  |  ||||||||  | |||||||||||||||||||||||  | || |||||||| || ||  |||||||||||||||| ||||| |||  ||| ||||| ||||||||||
------gtatgca-tttgtttctgtccacattag-gcctcaaaaattgatttgggt-cgtaagtactatt---atctgaaagt---gacaatacattcatcattcatagttttggaa---attgactacattgttttgaatgcagAACTTGAAATCAGACCTCAGTTTGTGGCAATTGGGCACATTACCACCAGGCCTAATAGCATTCCATGGCCATGTACACGTTATAGATCCCTTCTGGCACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9819527|gb|BE555040.1|BE555040
EST:     CTTGGAGGAAGACCAATATAAGCTCTACATACCATCATTGGGTTGAGCAG                         AATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGAACATTACCCCCTGGA
genomic: CTTGGAGGAAGACCAATATAAGCTCTACATACCATCATTGGGTTGAGCAGgtatatataa ... ctttatgcagAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGAACATTACCCCCTGGA
EST: gi|192328092|gb|FK022831.1|FK022831
EST:     CTTGGAGGAAGACCAATATAAGCTCTACATACCATCATTGGGTTGAGCAG                         AATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGAACATTACCCCCTGGA
genomic: CTTGGAGGAAGACCAATATAAGCTCTACATACCATCATTGGGTTGAGCAGgtatatataa ... ctttatgcagAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGAACATTACCCCCTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatattggagaaagatagtataataatacataattggtattatgctttatgcagAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGAACATTACCCCCTGGATTAATAGCATTCCATGGTCATGTCCACACTATTGATCCTTTCTGGCACA
               atagtataataataca  TA-rich tract