Sequence
atgc intronic sequence ATGC exonic sequencegtaagcaaaaccaacaaccttaattgtttttttctctctggtggggtttctcccctttgaaattgtttcaactaaacttgcttaaaaaaaacttttttcatcaatttatagGTTGAAAATGTGAAGCATTCGGCCCCAAACAAGATGGTTTTGTATTTCACAGGCGCCACCAACATACTCTACACTTTCGGCGGGCACGCCGTCACAGT
Basic information
| species | Glycine max |
| transcript | GLYMA11G35080.1 |
| intron # | 5 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G35080.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0067g00330.t01 (Vitis vinifera), 3'ss of exon 5
------------------gtaagcaaaaccaacaacct-taattgtttttttctctctggtggggtttctcccctttgaaatt-----gtttcaact-aaacttgcttaaaaaaaacttttttcatcaatttatagGTTGAAAATGTGAAGCATTCGGCCCCAAACAAGATGGTTTTGTATTTCACAGGCGCCACCAACATACTCTACACTTTCGGCGGGCACGCCGTCACAGT
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gtattcttcattttttctttctgggtttttcactccttacaatcatccttcactggataaacgaatcactttccttttatcttttgtaatctcaacggaaagccattgactttggatggtttttactgttttacagGTTGAAAATGTGAAGCACACAGGCCCTACTAAGCTGGTCCTGTATTTCACTGGGGCCACCAACATCCTCTACACTTTCGGCGGACACGCCGTCACTGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151394045|gb|EV263916.1|EV263916EST: CCACCTACACTGCTTGGTATTTGACCATTGCAGCCATTGCTCATGGCCAG GTTGAAAATGTGAAGCATTCG
genomic: CCACCTACACTGCTTGGTATTTGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaaaa ... caatttatagGTTGAAAATGTGAAGCATTCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaaattgtttcaactaaacttgcttaaaaaaaacttttttcatcaatttatagGTTGAAAATGTGAAGCATTCGGCCCCAAACAAGATGGTTTTGTATTTCACAGGCGCCACCAACATACTCTACACTTTCGGCGGGCACGCCGTCACAGT
aactaaa putative branch site (score: 2)
cttttttcatc putative PPT
ttaaaaaaaacttttt TA-rich tract
