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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaatataaatatgttatatttcttatccttgtgtctcttatctaacagtaagataatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAATTCTGAACCTCGTGGCTTTG

Basic information

species Glycine max
transcript GLYMA11G20000.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G20000.3 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0061g00460.t01 (Vitis vinifera), 3'ss of exon 5
---------------------------------gtaaggaatataaatatgttatatttcttatccttgtgtctcttatc------taacagt--aagataatgt-acagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAATTCTGAACCTCGTGGCTTTG
                                  |  | || | ||   |  |   || |  |||| |   | |  |  |      |||   |  || | | ||| |||| || ||||||||||| || ||||| || |||||||| ||||||||||| || || ||||||||||| ||||
gtaacaattatcatttattttgatgtcctctctatctgcaaaacaatctttctggcttacccatccctagttttgctgacaacgtgtaatgttccaaaaaattgttacagCAACTGGGGTACTGAGAGTGATCCTGACTTCAAAGGTTACCACAATGGGAACTCAGAACCTCGTGGATTTG

upper sequence: GLYMA11G20000.3 (Glycine max), 3'ss of exon 5
lower sequence: EFJ12454 (Selaginella moellendorffii), 3'ss of exon 4
gtaaggaatataaatatgttatatttcttatccttgtgtctcttatctaacagtaagataatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAATTCTGAACCTCGTGGCTTTG
              || || || ||    |   |  | |||  ||       ||         |  || || ||||| ||||| |  ||||||||||| ||||| ||||||||||| ||| |||| ||||| |||| ||
-------------gtacgtaatgttggagagattgttttcttctaatcgtatgtgttgggcattgtagCAACTGGGGGACTGAGACGGATCCAGAGTTTAAAGGCTACCACAATGGAAATGCTGATCCTCGCGGCTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405503|gb|EV275317.1|EV275317
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|298185446|gb|HO030659.1|HO030659
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|298177963|gb|HO023812.1|HO023812
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|209700450|gb|BW664439.1|BW664439
EST:     TTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: TTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|298180120|gb|HO025335.1|HO025335
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|15815588|gb|BI787863.1|BI787863
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|12496512|gb|BG047101.1|BG047101
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|24135476|gb|BU925986.1|BU925986
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|192316899|gb|FK010858.1|FK010858
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCATAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|14125384|gb|BG789822.1|BG789822
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|298195999|gb|HO044390.1|HO044390
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|16105017|gb|BI892757.1|BI892757
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|151404584|gb|EV274398.1|EV274398
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|33390434|gb|CA853629.1|CA853629
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|24135454|gb|BU925964.1|BU925964
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|209716563|gb|BW658973.1|BW658973
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|208036471|gb|GD834386.1|GD834386
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAATTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|209715503|gb|BW682169.1|BW682169
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|192313140|gb|FK003722.1|FK003722
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAGTTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|14990115|gb|BI315788.1|BI315788
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|16347044|gb|BI972639.1|BI972639
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|298194433|gb|HO041081.1|HO041081
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|151397906|gb|EV267779.1|EV267779
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTGCAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|24135595|gb|BU926105.1|BU926105
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|209715504|gb|BW682170.1|BW682170
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|209716564|gb|BW658974.1|BW658974
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAA
EST: gi|298189901|gb|HO038304.1|HO038304
EST:     GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACA                         TAATTGGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCA
genomic: GATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACAgtaaggaata ... taatgtacagTAATTGGGG-TACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgttatatttcttatccttgtgtctcttatctaacagtaagataatgtacagTAATTGGGGTACTGAAAGCGATCCAGAGTTCAAAGGGTACCACAATGGCAATTCTGAACCTCGTGGCTTTG
                               atctaac  putative branch site (score: 2)
     ttatatttcttat  TA-rich tract