Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaaatgattcacacctgccccaattttgctgtgattaaattggttattttattatgtgccaagaaaattctaactttgctggttatacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTC

Basic information

species Glycine max
transcript GLYMA11G17930.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G17930.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g57340.1 (Oryza sativa), 3'ss of exon 5
--------------gtatgtaaatgatt-cacacctgccccaattttgctgtgattaaattggttattttattatgtgccaagaaaattctaactttgct-ggttata--------cat------gcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTC
                |   | || |    | |   ||  || ||| |     ||   |||| || ||| |  ||         ||| | |    ||| |   | |||        |||      |||||||||| ||||||| | || || ||||| ||||| ||||| ||| || ||||||||||||||||||| ||||| |||||| | ||||| ||||| || ||
gtgagtctcccttcaaagaaagatcaccatagagtagcagcattttggaaaccatctgattgtttttttaagcattcattttagaaactattttattgtttactcatatcggccgtcatcttgtcgcagATTCATTCAAGGCTGTCAACGACGAGGGCATGCCGATGTACCAGCGGCCATTCATGAAGGGGAAGCTCTACATCCACTTCTCCGTGGAATTCCCCGACTC

upper sequence: GLYMA11G17930.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G056988_T04 (Zea mays), 3'ss of exon 2
gtatgtaaatgattcacacctgccccaattttgctgtgattaaattggttatttta--ttatgtgccaagaaaattctaactttgctggttatacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTC
||  ||   |   |   |||     || || |     |   || ||  || |  |   ||   | |  |   |    ||  |||  |    ||   ||||||||| | |||||| || || ||||| || |||||||||||||||||| | ||||||||||| ||||| ||||| |||||| | ||||||||||| || ||
gttggtgtcttggtggtacc-atgtcagttgtcaacagtccaatttcattctcatggctttgattctgacgtatgattatgtttattttaaatttgtgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC

upper sequence: GLYMA11G17930.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G063238_T01 (Zea mays), 3'ss of exon 8
gtatgtaaatgattcacacctgccccaattttgctgtgattaaattggttatttta--ttatgtgccaagaaaattctaactttgctggttatacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTC
||  ||   |   |   |||     || || |     |   || |   || |  |   ||   | |  |   |    ||  |||  |    ||   ||||||||| | |||||| || || ||||| || |||||||||||||||||| | ||||||||||| ||||| ||||| |||||| | ||||||||||| || ||
gttggtgtcttggtggtacc-atgtcagttgtcaacagtccaattccattctcatggctttgattctgacgtatgattatgtttattttaaatttgtgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC

upper sequence: GLYMA11G17930.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G346863_T01 (Zea mays), 3'ss of exon 2
gtatgtaaatgattcacacctgccccaattttgctgtgattaaattggttattttatta-tgtgccaagaaaattctaactttgctggttatacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTC
    ||   ||||||  || |      ||  | |||        || || ||||    | ||  |   ||  ||| ||| ||||           ||||||||| | |||||| || || ||||| || |||||||||||||||||| | ||||||||||| ||||| ||||| |||||| | ||||||||||| || ||
----gttggtgattctgacgtatgattatgattctgcc------ttcgtgatttggccaatgctcattgattattttaaatttg-----------tgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC

upper sequence: GLYMA11G17930.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G028218_T02 (Zea mays), 3'ss of exon 5
gtatgtaaatgattcacacctgccccaattttgctgtgattaaattggttattttatt-atgtgccaagaaaattctaactttgctggttatacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTC
    ||   ||||||  || |      ||  | |||        || || ||||     |||  |   ||  ||| ||| ||||           ||||||||| | |||||| || || ||||| || |||||||||||||||||| | ||||||||||| ||||| ||||| |||||| | ||||||||||| || ||
----gtgggtgattctgacgtatgattatgattctgcc------ttcgtgatttggcccatgctcattgattattttaaatttg-----------tgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC

upper sequence: GLYMA11G17930.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G029079_T01 (Zea mays), 3'ss of exon 7
gtatgtaaatgattcacacctgccccaattttgctgtgattaaattggttatttta--ttatgtgccaagaaaattctaactttgctggttatacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTC
||  ||   |   |   ||| |   || || |     |   || |   || |  ||  ||  || |  |   |    ||   ||  |    ||   ||||||||| | |||||| || || ||||| || |||||||||||||||||| | ||||||||||| ||||| ||||| |||||| | ||||||||||| || ||
gttggtgtcttggtggtacc-gtgtcagttgttaaccgtccaattccattctcatagctttggttctgatgtatgattatgattattttaaatttgtgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC

upper sequence: GLYMA11G17930.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G434839_T01 (Zea mays), 3'ss of exon 12
gtatgtaaatgatt-caca-cctgcc--ccaattttgctgt--gattaaattggttattttattatgtgccaagaaaattctaactttgctggttatacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTC
   |  |||| |||  | | ||||       ||| ||  ||  |||||   |  |   ||  | || || | |        | | |    |    ||   ||||||||| | |||||| || || ||||| || |||||||||||||||||| | ||||| ||||| ||||| ||||| |||||| | ||||||||| | || ||
---taaaaattattgtatagcctggtgggtgattctgacgtatgattatgattctgccttcgtgatttggccaatgctcattgattactttaa--atttgtgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATAAAGGGCAAGCTGTACATCCACTTCTCAGTGGAGTTCTCGGACTC

upper sequence: GLYMA11G17930.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G354746_T01 (Zea mays), 3'ss of exon 4
gtatgtaaatgattcacacctgccccaattttgc-tgtgattaaattggttattttattatgtgccaagaaaattctaactttgctggttatacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTC
                    ||    | | |  | | ||||||   |  |   ||  | || || | |        | | | |  |    ||   ||||| ||| | |||| | || || ||||| || ||||||||||||||| || | ||||||||||| ||||| ||||| |||||| | ||||||||||| || ||
-------------------gtgggtgattctgacgtatgattatgattctgccttcgtgatttggccaatgctcattgattattttaa--atttgtgcagGTTCTTTCAAGACAATCAACGATGAAGGCATGCCCATGTATCAGTGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC

upper sequence: GLYMA11G17930.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G134917_T01 (Zea mays), 3'ss of exon 5
gtatgtaaatgattcacacctgccccaattttgctgtgattaaattggttattttattatgtgccaagaaaattctaactttgctggttatacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTC
    ||   ||  ||  | |       | | |||  || |  |  |||  | |      |||        ||||   |  ||||           |||||||| | |||||| || || || || || ||||||||||| |||||| | ||||||||||| ||||| ||||| |||||| | ||||||||||| || ||
----gtgggtggatctgaacatgaatgactctgccttggtgcatctggccaatgctcactgttt------aattacgaacttgc-----------gcagATTCTTTCAAGGCGATCAACGACGAAGGCATGCCCATGTACCAGAGGCCGTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC

upper sequence: GLYMA11G17930.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G433854_T01 (Zea mays), 3'ss of exon 4
gtatgtaaatgattcacacctgccccaattttgc-tgtgattaaattggttattttattatgtgccaagaaaattctaactttgctggttatacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTC
                    ||    | | |  | | ||||||   |  |   ||  | || || | |        | | | |  |    ||   ||||| ||| | |||| | || || ||||| || ||||||||||||||| || | ||||||||||| ||||| ||||| |||||| | |||||||||||  | ||
-------------------gtgggtgattctgacgtatgattatgattctgccttcgtgatttggccaatgctcattgattattttaa--atttgtgcagGTTCTTTCAAGACAATCAACGATGAAGGCATGCCCATGTATCAGTGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGAACTC

upper sequence: GLYMA11G17930.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0080g01230.t01 (Vitis vinifera), 3'ss of exon 5
gtatgtaaatgat-tcacacctgccccaattttgctgtgattaaattggttattttattatgt---gccaagaaaattctaactttgctg-------gttatacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTC
    || | | || ||| | ||   | |  |||  | | |||| || | |   | | |    |   | ||   ||||  | |||  |  |       ||| |  ||||||||   | |||||| || ||||| ||||||||||| || || |||||| ||||||||| ||||||||| ||||| || ||||  ||||||||||| ||  |
----gttagtaatgtcatatct---ctatgtttcttttcattacatggctctctctgtgtgatttggtcatttaaatgttgactggggggtgggggagttgttaatgcagATCAGTTCAAGGCAATCAATGACGAGGGAATGCCAATATACCAGAGGCCATTCATGAGGGGGAAGCTATACATCCAGTTCAACGTGGAGTTCCCGGACAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207770058|gb|GD742260.1|GD742260
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|209719354|gb|BW662592.1|BW662592
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|16996159|gb|BM085531.1|BM085531
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|7284823|gb|AW597248.1|AW597248
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGNGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGANGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|15000613|gb|BI321427.1|BI321427
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|10844001|gb|BF067347.1|BF067347
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|209714487|gb|BW684863.1|BW684863
EST:     TAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|193671233|gb|FK611969.1|FK611969
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGG
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGG
EST: gi|11687421|gb|BF595097.1|BF595097
EST:     CTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: CTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|193451800|gb|FK419354.1|FK419354
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|10234264|gb|BE803152.1|BE803152
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|18732815|gb|BM527265.1|BM527265
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|27445799|gb|CA952922.1|CA952922
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|193684877|gb|FK623209.1|FK623209
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|209729275|gb|BW660335.1|BW660335
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|193354260|gb|FK322856.1|FK322856
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAAATGCCCATGTATCAGAGGTCA
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGG-AATGCCCATGTATCAGAGGTCA
EST: gi|19053591|gb|BM732258.1|BM732258
EST:     TGGCCGTCAACTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|31459268|gb|CD401296.1|CD401296
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|151410842|gb|EV280657.1|EV280657
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|15286755|gb|BI470646.1|BI470646
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|193525130|gb|FK477961.1|FK477961
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|192303614|gb|FG995964.1|FG995964
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|213601915|gb|DB976190.1|DB976190
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|208280677|gb|GE080987.1|GE080987
EST:     CTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: CTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|19346644|gb|BM891524.1|BM891524
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGNGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|213602620|gb|DB978091.1|DB978091
EST:     GTCAGCTTCTTATTAAATCATGTATTGGGGAAGGGGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: GTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|38193730|gb|CF922936.1|CF922936
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|11274913|gb|BF325238.1|BF325238
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCANAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|26058944|gb|CA801858.1|CA801858
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|209718481|gb|BW666265.1|BW666265
EST:     CTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: CTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|15663986|gb|BI701357.1|BI701357
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|9204289|gb|BE330513.1|BE330513
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|12688299|gb|BG154635.1|BG154635
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTNGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|17964584|gb|BM271317.1|BM271317
EST:     TGGCCGCCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|214007794|gb|DB987766.1|DB987766
EST:     AGTTGTCAAGCCTG                         ATTCATACAAGGCTAAAAATGATGAGGGAATGCCCATCACA-CAGATGTCA
genomic: AGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCAT-GTATCAGAGGTCA
EST: gi|254324525|gb|GR833950.1|GR833950
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|192301554|gb|FG994766.1|FG994766
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|7233200|gb|AW568548.1|AW568548
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|193357827|gb|FK321051.1|FK321051
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|193409731|gb|FK372027.1|FK372027
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|31459971|gb|CD401999.1|CD401999
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|16341933|gb|BI967528.1|BI967528
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|18038809|gb|BM307103.1|BM307103
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|254346521|gb|GR856243.1|GR856243
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|193485088|gb|FK450702.1|FK450702
EST:     CTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: CTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
EST: gi|193597842|gb|FK550130.1|FK550130
EST:     TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTG                         ATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT
genomic: TGGCCGTCAGCTTCTTATTAAATCAAATCCTGGGGAAGTTGTCAAGCCTGgtatgtaaat ... atacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggttattttattatgtgccaagaaaattctaactttgctggttatacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTC
                            ttctaac  putative branch site (score: 1)
     tattttattatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtaaatgattcacacctgccccaattttgctgtgattaaattggttattttattatgtgccaagaaaattctaactttgctggttatacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG