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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtagaagcattgatttacaggtcttagctcttaatcaattctttgttcttattcttaatcttacaataaggttcaatcaatgtcttaattgcatgtagGCTGTGGAAGTTCAGGGTGGCAAGCACCGGAACAACTTGTTCAAGGACGTCAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGTGTTCTCTTTTTCTG

Basic information

species Glycine max
transcript GLYMA11G09240.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09240.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv07s0031g02180.t01 (Vitis vinifera), 3'ss of exon 4
gtgagtagaagcattgatttacaggtct-tagctctta-atcaattctttgttcttattcttaatcttacaataag-gttcaatcaatgtcttaattgcatgtagGCTGTGGAAGTTCAGGGTGGCAAGCACCGGAACAACTTGTTCAAGGACGTCAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGTGTTCTCTTTTTCTG
     |    |      || |||  |    |  ||  | || |||  |  ||  ||||| ||  | ||    | || | |  ||  ||| || ||||   || ||| | ||| ||||| || ||||| ||||| || || ||| |||| ||||| ||||||||||| || ||||| ||||||||||||||  | ||||||| |||
--atttcactggcccccttcacaacttagcaattcacatataaatcataagtggttattatttctattgagttcagtgatttatttatgactcaatt---tgcagGTTATGGCAGTTCGGGTTGGCAGGCACCTGAGCAGCTTCTTCATGGACGCCAAACACGAGCAGTAGATTTGTTTAGTTTAGGTTGCATCCTCTTTTCCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcttattcttaatcttacaataaggttcaatcaatgtcttaattgcatgtagGCTGTGGAAGTTCAGGGTGGCAAGCACCGGAACAACTTGTTCAAGGACGTCAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGTGTTCTCTTTTTCTG
                                       tcttaat  putative branch site (score: 3)
     ttattcttaatcttac  TA-rich tract