1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttggtgaaaaatgtatcagttagatgtctgttttcttcttatctttaagtggtgtggtggaagattttgactatttattctgatccttgccttcgatagGCTTCTGGAACTGTGGATTTACGACATTTTGCATTTTATGCATTTGCTGGTCGATCTGGTGATGAACGATGGAGCAGAAAAAATGAG
species | Glycine max |
transcript | GLYMA11G07720.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGGTGCAAGGTTTGCTGAGCAACATCAAAGAAGTGCTGCTGAAAAGGAG GCTTCTGGAACTGTGGATTTACGACATTTTGCATTTTATGCATTTGCTGGTEST: gi|207805500|gb|GD776423.1|GD776423
genomic: TGGGTGCAAGGTTTGCTGAGCAACATCAAAGAAGTGCTGCTGAAAAGGAGgtatagacat ... ccttcgatagGCTTCTGGAACTGTGGATTTACGACATTTTGCATTTTATGCATTTGCTGGT
EST: GGGTGCAAGGTTTTGCTGAGCAACATCAAAGAAGTGCTGCTGAAAAGGAG GCTTCTGGAACTGTGGATTTACGACATTTTGCATTTTATGCATTTGCTGGT
genomic: GGGTGCAAGG-TTTGCTGAGCAACATCAAAGAAGTGCTGCTGAAAAGGAGgtatagacat ... ccttcgatagGCTTCTGGAACTGTGGATTTACGACATTTTGCATTTTATGCATTTGCTGGT
ttaagtggtgtggtggaagattttgactatttattctgatccttgccttcgatagGCTTCTGGAACTGTGGATTTACGACATTTTGCATTTTATGCATTTGCTGGTCGATCTGGTGATGAACGATGGAGCAGAAAAAATGAG
ttctgat putative branch site (score: 3)
tccttgccttc CT-rich tract
attttgactatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggtgaaaaatgtatcagttagatgtctgttttcttcttatctttaagtggtgtggtggaagattttgactatttattctgatccttgccttcgatagGCTTCTGGAACTGTGGATTTACGACATTTTGCATTTTATGCATTTGCTGGTCGATCTGGTGATGAACGATGGAGCAGAAAAAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
tttggtg
- - - - - - - - - - - - - gtctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - tggtgtg