1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agcctctgggcaatgggatacgaagttttatacttcataataaattttcatattaaattgatgataaataaatttcttgcactgctgccggttgatccagGAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCGTTTGGAGACAAATTTCTTAAGCCCTATGTTGTTGCTGACCCAGAAATTCAG
species | Glycine max |
transcript | GLYMA10G43810.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGGGATTCATAATTTGGGCTG GAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCGTTTGGAGACAEST: gi|192315402|gb|FK009204.1|FK009204
genomic: GGGGGATTCATAATTTGGGCTGgtaattttct ... gttgatccagGAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCGTTTGGAGACA
EST: TGATGAACGTCGAAGGATTGAACAGGCTGGGGGATTCATAATTTGGGCTG GAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCGTTTGGAGACAEST: gi|208189453|gb|GD987693.1|GD987693
genomic: TGATGAACGTCGAAGGATTGAACAGGCTGGGGGATTCATAATTTGGGCTGgtaattttct ... gttgatccagGAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCGTTTGGAGACA
EST: GGCTGGGGGATTCATAATTTGGGCTG GAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCGTTTGGAGACA
genomic: GGCTGGGGGATTCATAATTTGGGCTGgtaattttct ... gttgatccagGAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCGTTTGGAGACA
tttcatattaaattgatgataaataaatttcttgcactgctgccggttgatccagGAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCGTTTGGAGACAAATTTCTTAAGCCCTATGTTGTTGCTGACCCAGAAATTCAG
tattaaattgatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcctctgggcaatgggatacgaagttttatacttcataataaattttcatattaaattgatgataaataaatttcttgcactgctgccggttgatccagGAACATGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCGTTTGGAGACAAATTTCTTAAGCCCTATGTTGTTGCTGACCCAGAAATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
-gcctctg
- - - - ggcaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgctgc