1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttagataggagcttttttttatagcataggatctattttattaggatttacattttctgtctattttgttttagcaacttaaatattactaattttttagGAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAATAAAGCTGATCTTCTTGAGAAGCGGGAAGTTGCTGTCCAG
species | Glycine max |
transcript | GLYMA10G35230.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGATATAACAAGCCCAGAATCTTTCAGCANAGCACAGTACTGGGGTAAG GAGCTACANAAACATGGAAGCCCTGATATAGTGATGGCACTTGTCGGTAATEST: gi|208204745|gb|GE006542.1|GE006542
genomic: ATGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAGgtagatttgc ... aattttttagGAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAAT
EST: ATGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAG GAGCTACAAAA-CATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAATEST: gi|7286166|gb|AW598653.1|AW598653
genomic: ATGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAGgtagatttgc ... aattttttagGAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAAT
EST: ATGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAG GAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAATEST: gi|298182667|gb|HO031402.1|HO031402
genomic: ATGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAGgtagatttgc ... aattttttagGAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAAT
EST: ATGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAG GAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAATEST: gi|15201204|gb|BI424748.1|BI424748
genomic: ATGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAGgtagatttgc ... aattttttagGAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAAT
EST: ATGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAG GAGCTACAAAAACATGGAAGCCCTGATATAATGATGGCACTGGTCGGTAAT
genomic: ATGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAGgtagatttgc ... aattttttagGAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAAT
atttacattttctgtctattttgttttagcaacttaaatattactaattttttagGAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAATAAAGCTGATCTTCTTGAGAAGCGGGAAGTTGCTGTCCAG
tactaat putative branch site (score: 1)
tttttt CT-rich tract
tattttgttttagcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagataggagcttttttttatagcataggatctattttattaggatttacattttctgtctattttgttttagcaacttaaatattactaattttttagGAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAATAAAGCTGATCTTCTTGAGAAGCGGGAAGTTGCTGTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC