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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacgataatcagatttaaatcatatttattgctttccgctaaagtgtagttaattatactgacattataccttttgtacaacagGGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAA

Basic information

species Glycine max
transcript GLYMA10G34150.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34150.3 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0019g05250.t01 (Vitis vinifera), 3'ss of exon 5
------------gtaaaacgataatcagatttaaatcatatttattgcttt--------ccgctaaagtgtagttaattatactgacattataccttttgtacaacagGGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAA
             | | |   |  |   |   || | | |   | ||            | |||||   ||   |   | ||   | | | |   ||   ||  |||||||| |||  | ||||| || |||||||| ||||||||||| || |||||||| ||||| ||||| || ||
gtactattagtatttagatttttttatcacacaagttacaaccactgtaaaaaaagaaactgctaattggtgccttcctctaaataaactgtggtttaaatattacagGGAAAAGCTCTCAATGCTGTGGCATCCCGTAATGTCAAAGTGATGGTAGTGGGCAACCCCTGCAACACCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15338126|gb|BI498782.1|BI498782
EST:     TGGAACGAGCAGACTTGTTAGACATAAATGGGCAGATTTATGCAGCGCAG                         GGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTG
genomic: TGGAACGAGCAGACTTGTTAGACATAAATGGGCAGATTTATGCAGCGCAGgtaaaacgat ... tgtacaacagGGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTG
EST: gi|10236029|gb|BE804977.1|BE804977
EST:     TGGAACGAGCAGACTTGTTAGACATAAATGGGCAGATTTATGCAGCGCAG                         GGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTG
genomic: TGGAACGAGCAGACTTGTTAGACATAAATGGGCAGATTTATGCAGCGCAGgtaaaacgat ... tgtacaacagGGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTG
EST: gi|151394825|gb|EV264696.1|EV264696
EST:     TGGAACGAGCAGACTTGTTAGACATAAATGGGCAGATTTATGCAGCGCAG                         GGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTG
genomic: TGGAACGAGCAGACTTGTTAGACATAAATGGGCAGATTTATGCAGCGCAGgtaaaacgat ... tgtacaacagGGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTG
EST: gi|254344943|gb|GR851426.1|GR851426
EST:     TGGAACGAGCAGACTTGTTAGACATAAATGGGCAGATTTATGCAGCGCAG                         GGAAGAGCTTTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTG
genomic: TGGAACGAGCAGACTTGTTAGACATAAATGGGCAGATTTATGCAGCGCAGgtaaaacgat ... tgtacaacagGGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTG
EST: gi|5606819|gb|AI900917.1|AI900917
EST:     TGGAACGAGCAGACTTGTTAGACATAAATGGGCAGATTTATGCAGCGCAG                         GGAAGAGCTTTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTG
genomic: TGGAACGAGCAGACTTGTTAGACATAAATGGGCAGATTTATGCAGCGCAGgtaaaacgat ... tgtacaacagGGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTG
EST: gi|151403877|gb|EV273687.1|EV273687
EST:     TGGAACGAGCAGACTTGCTAGACATAAATGGGCAGATTTATGCAGCGCAG                         GGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTG
genomic: TGGAACGAGCAGACTTGTTAGACATAAATGGGCAGATTTATGCAGCGCAGgtaaaacgat ... tgtacaacagGGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTG
EST: gi|27426251|gb|CA937771.1|CA937771
EST:     TGGAACGAGCAGACTTGTTAGACATAAATGGGCAGATTTATGCAGCGCAG                         GGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTG
genomic: TGGAACGAGCAGACTTGTTAGACATAAATGGGCAGATTTATGCAGCGCAGgtaaaacgat ... tgtacaacagGGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttccgctaaagtgtagttaattatactgacattataccttttgtacaacagGGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAA
                           tactgac  putative branch site (score: 1)
                                      tacctttt  putative PPT
               tgtagttaattata  TA-rich tract