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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatattcttccatcaaattcaaccatctatctgttatttcatccatgtttttagttcacaccattttagtttgatttgacatctcatttttgtaatattgataagttttgctgttgtaaaattcgtatatttgtgtcctactatccttatgtttttatcttctattatacagCAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAG

Basic information

species Glycine max
transcript GLYMA09G39150.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39150.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv15s0046g02040.t01 (Vitis vinifera), 3'ss of exon 5
gttcatattcttccatcaaattcaaccatctatctgttatttcatccatgtttttagttcacaccattttagtttgatttgacatctcatttttgtaatattgataagttttgctgttgtaaaattcgtatatttgtgtcctactatccttatgtttttatcttctattatacagCAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAG
                                                                  |  | |||| | ||    |||  | |||| | |  |  |  | |||  |  |     |||  || | |    ||||| |||  |||| ||| | |||  | ||  ||||||||||   ||||||||||||||||||||| | |||||||||    | ||  |  || |||| ||||| || ||||||||||||||||| |||||||||
-----------------------------------------------------------------gtcatggtttaaatt----tcttgtctttgaatttct--ttcgctttattccttatttattgttagagtctgttcctaatat--ttat-tttctctctattgtt-cacagCAAACAATTTGGTTATTCTTTAGGGACATGTTCAAAGGAATTGGGTTATCCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207843659|gb|GD813872.1|GD813872
EST:     TTTTGTGATTGAGGCCCGTCATGGTTTTAATAAG                         CAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
genomic: TTTTGTGATTGAGGCCCGTCATGGTTTTAATAAGgttcatattc ... tattatacagCAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
EST: gi|193463989|gb|FK428319.1|FK428319
EST:     TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAG                         CAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
genomic: TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAGgttcatattc ... tattatacagCAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
EST: gi|15202361|gb|BI425361.1|BI425361
EST:     TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAG                         CAAACACCATGGTTATTCTTTAGGGAC
genomic: TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAGgttcatattc ... tattatacagCAAACACCATGGTTATTCTTTAGGGAC
EST: gi|192302658|gb|FG994896.1|FG994896
EST:     TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAG                         CAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
genomic: TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAGgttcatattc ... tattatacagCAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
EST: gi|207689928|gb|GD672433.1|GD672433
EST:     TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAG                         CAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
genomic: TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAGgttcatattc ... tattatacagCAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
EST: gi|213594940|gb|DB971799.1|DB971799
EST:     TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAG                         CAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT
genomic: TTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAATAAGgttcatattc ... tattatacagCAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaattcgtatatttgtgtcctactatccttatgtttttatcttctattatacagCAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAG
                                  tttttatcttctatt  CT-rich tract
                             ttatgtttttatcttc  TA-rich tract