Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttttataaactatgctttcttgaagttatcatgctgaatgattagctcatcaactactcttgcctcaaatttatacagGGATCTTATCCTTTTAATCCTTTTGCCATGCCTTCTCCTAATGGCATTGCTGAGGCTTCA

Basic information

species Glycine max
transcript GLYMA09G34170.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34170.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 5
gtatttt-ttataaactatgctttc-ttgaagttatcatgctga-atgattagctcatcaactactct----tgcctcaaat----------ttat------acagGGATCTTATCCTTTTAATCCTTTTGCCATGCCTTCTCCTAATGGCATTGCTGAGGCTTCA
||||||| || |  |  |||||||  ||  |||||| ||  ||  ||  |   ||      || |  |    |  || ||||          ||||      |||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||| | || 
gtattttcttttggagcatgctttagtttcagttataatattgtcatcgtgtacttgctttctgcattccgctatctaaaatgctcaatgttttattttttaacagGGATCTTATCCTTTCAGTCCTTTTGCTATGCCTTCTCCAAATGGCATTGCTGAGACCTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6482300|gb|AW201569.1|AW201569
EST:     TTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCG                         GGATCTTATCCTTTTAATCCTTTTGCCATGCCTTCTCCTAATGGCATTGCT
genomic: TTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGgtatttttta ... atttatacagGGATCTTATCCTTTTAATCCTTTTGCCATGCCTTCTCCTAATGGCATTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttatcatgctgaatgattagctcatcaactactcttgcctcaaatttatacagGGATCTTATCCTTTTAATCCTTTTGCCATGCCTTCTCCTAATGGCATTGCTGAGGCTTCA
                                         tcaaatttata  TA-rich tract