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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctggaattttgtccaatttattttctttgaattttcattcccgttttgcttccatttttattttttatttttttatgattcagATGTATGAAGAGTTGCAAGTACTTTCTCCACTTGTTTCTACTAGAGAGTTCTACTTTCTGCGTTACTGTCAGCAAATTGAACAAGGCTTATGGGCAATAG

Basic information

species Glycine max
transcript GLYMA09G29810.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G29810.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 5
----gtatgctggaattttgtccaatttattttctttgaattttcattcccgttttgcttccatttttattttttatttttttatgatt-cagATGTATGAAGAGTTGCAAGTACTTTCTCCACTTGTTTCTACTAGAGAGTTCTACTTTCTGCGTTACTGTCAGCAAATTGAACAAGGCTTATGGGCAATAG
     ||      ||  ||  ||  |  ||||   |     || ||||    ||    ||  | ||||  |        |  | | | | |||||||||| |||| |||| || |||||  | |||||  ||||| | || ||||| || ||  | || ||||| |||||||||||||||| |||||||||||
gtagctaccagcaaacatttccctgtcgatttcagtatttcttacattagaattccatttgaaatttttctcagccaaatagtgtcactgcagATGTATGGAGAGCTGCAGGTGCTTTCATCCCTTGTACCTACTCGGGAATTCTATTTCCTCAGATATTGTCAACAAATTGAACAAGGCTCATGGGCAATAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattttcattcccgttttgcttccatttttattttttatttttttatgattcagATGTATGAAGAGTTGCAAGTACTTTCTCCACTTGTTTCTACTAGAGAGTTCTACTTTCTGCGTTACTGTCAGCAAATTGAACAAGGCTTATGGGCAATAG
         ttcccgttttgcttcc  CT-rich tract
               ttttgcttccattttt  TA-rich tract