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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatctaaaatattttaaaaatactttttaacatttatccaattagtttgctgcatatattgattataaatatgataaattttccatttggtactgcagGCTGTGGTGCTGATATACATGTCATCGTAAAAATCGAAAGTGCAGACTCTATACCAAATTTGCATTCAATTATCACTGCGTCTGATGGG

Basic information

species Glycine max
transcript GLYMA09G23150.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G23150.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G152686_T01 (Zea mays), 3'ss of exon 5
gtaaatatctaaaatattttaaaaatactttttaac---atttatccaattagtttgctgcatatattgattataaatatgataaatt--ttccatttggtactgcagGCTGTGGTGCTGATATACATGTCATCGTAAAAATCGAAAGTGCAGACTCTATACCAAATTTGCATTCAATTATCACTGCGTCTGATGGG
                         || | || |||   | ||    ||  |   |       |  ||  ||   ||| |  | |  |  ||| |||   | || |||| ||   |||||| |||||||| ||||||||||| |||||||||||||| || || || || |||||||| ||||| || |||||||||
------------------------gtaatcttcaacccaactttgtaaaaaatcatatcatgcacctttttttacaatttactgagctcattctattctattct-cagGTTGCAATGCTGACATACATGTTATCGTAAAAATAGAAAGTGCAGACTCCATCCCCAACTTACATTCAATCATCACAGCATCTGATGGG

upper sequence: GLYMA09G23150.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G52920.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaaatatctaaaatattttaaaaatactttttaacatttatccaattagtttgctgcatatattgattataaatatgataaattttccatttggtactgcagGCTGTGGTGCTGATATACATGTCATCGTAAAAATCGAAAGTGCAGACTCTATACCAAATTTGCATTCAATTATCACTGCGTCTGATGGG
|||||||  |  ||  | ||  |       |  |  ||||  | |     ||| ||   |    | |   | |   || |   | || ||  |  |  |||||   |||||||||||||||| || || || ||||| || ||||||||||| ||||| || ||||| || |||||||| || || ||||||
gtaaatacttggaacctattccatcctaagtgaatgatttgcctatgatatttcctttttggtctaaccttgagattgtt---tgttacaaatatt--tgcagATAGTGGTGCTGATATACACGTGATAGTGAAAATTGAGAGTGCAGACTCCATACCTAACTTGCACTCCATTATCACAGCATCAGATGGG

upper sequence: GLYMA09G23150.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0050g02180.t01 (Vitis vinifera), 3'ss of exon 5
gtaaatatctaaaatattttaaaaatactttttaacatttatccaattagtttgctgcatatattgattataaatatgataaattttccatttggtactgcagGCTGTGGTGCTGATATACATGTCATCGTAAAAATCGAAAGTGCAGACTCTATACCAAATTTGCATTCAATTATCACTGCGTCTGATGGG
|||||||  ||  |||||        | |   |||   | |     ||  | ||     |   |  | | | |  |     ||| ||    ||| | | |||||||||  ||| ||||| |||||||| || ||||| |||||||| ||||| || || ||| | ||||||||||| || || |||||||||
gtaaatacttaggatattcatttggaaataactaaa--taacttgcttgatctgtaatttgcttcaaattttaccacttataatctttaccttgtttcggcagGCTGTAATGCAGATATCCATGTCATTGTTAAAATTGAAAGTGCCGACTCCATTCCCAATCTACATTCAATTATTACCGCATCTGATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttgctgcatatattgattataaatatgataaattttccatttggtactgcagGCTGTGGTGCTGATATACATGTCATCGTAAAAATCGAAAGTGCAGACTCTATACCAAATTTGCATTCAATTATCACTGCGTCTGATGGG
             tattgat  putative branch site (score: 3)
          atatattgattataaa  TA-rich tract